Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g170 ATGTGTTATCGGGAATTCGAAAGATCGGAAGAAAAGAGTTTGAACATGGGAGAGGCACAAAACATGCCAGATATGGAGGAAGGATCTCTACTCGTTGGAATGGAGTATAGAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGGGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGGTTTTTGAAGGCACTTCTGGAATTGACAACAAATACACAACCGTGCAATTTACTGGGGAGGTTTTGAAAACACCTGTATCACTGGATATGCTTGGCCGCATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCCCCAATTCTGCCAGAGGCTTACCTAGATATTTCTGGAAGTTCTATCAACCCCAGTGAGAGAACCTATCCTGAAGAGATGATACAAACAGGGATTTCTACTATTGATGTCATGAACTCCATTGCTCGAGGTCAAAAGATCCCTCTTTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCACAAATCTGTCGTCAGGCTGGTCTTGTAAAGCGGTTGGAAAAATCTGGAAATCTCCTAGAGGATGAGGTAGAGGACAATTTCGCCATCGTCTTTGCTGCTATGGGAGTAAACATGGAAACAGCACAATTTTTTAAGCGTGATTTTGAGGAAAATGGATCCATGGAGAGAGTGACCCTTTTCCTAAACTTGGCCAATGATCCCACCATAGAACGCATTATCACTCCTCGAATTGCTCTCACAACTGCAGAATATTTGGCTTATGAGTGTGGGAAGCATGTTCTAGTTATATTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGGTATCTGCAGCCCGGGAGGAAGTACCTGGAAGGCGTGGGTATCCTGGGTATATGTATACTGATCTTGCAACAATTTATGAGCGTGCTGGACGTATAGAAGGGCGAAAAGGCTCCATCACACAAATTCCTATTTTAACCATGCCTAATGATGATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAACCAGCTATATGCGAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAGGAAGCACTCTCTTCTGAGGATCTGCTTTATCTGGAGTTCCTAGACAAATTCGAGAGGAAATTTGTGGCTCAAGGGGCTTATGATACCCGCAACATCTTCCAGTCACTAGATTTGGCGTGGACATTACTCCGCATCTTCCCCCGTGAGCTTCTCCACCGTATACCTGCAAAGACACTGGACCAGTACTACAGTCGTGATGCAGCAAACTGA 1512 44.38 MCYREFERSEEKSLNMGEAQNMPDMEEGSLLVGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGNLLEDEVEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1698713 1706243 - Vvi18g170 Vvi18g170 779873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g170 503 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 19 503 IPR022879 -
Vvi18g170 503 PIRSF V-ATPsynth_beta/V-ATPase_B 27 503 IPR022879 -
Vvi18g170 503 Gene3D - 44 503 - -
Vvi18g170 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 398 IPR027417 -
Vvi18g170 503 CDD ATP-synt_V_A-type_beta_C 402 496 - -
Vvi18g170 503 CDD V_A-ATPase_B 107 394 - -
Vvi18g170 503 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 35 502 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vvi18g170 503 Hamap V-type ATP synthase beta chain [atpB]. 33 501 IPR022879 -
Vvi18g170 503 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 162 392 IPR000194 GO:0005524
Vvi18g170 503 Pfam ATP synthase alpha/beta family, beta-barrel domain 39 105 IPR004100 GO:0046034|GO:1902600
Vvi18g170 503 ProSitePatterns ATP synthase alpha and beta subunits signature. 383 392 IPR020003 GO:0005524
Vvi18g170 503 CDD ATP-synt_V_A-type_beta_N 35 106 - -
Vvi18g170 503 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 19 503 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g198 Vvi18g170 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g170 K02147 - vvi:100257413 964.14