Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1700 ATGCAAGGAGTAGTCCTGAGTGATATTTGCGGCTTGTACTCCTTGCAAGTGTTAGATCTATCTGTCTGCTGTATAGATGAAGGAGGAATCCCCACTGAATTTTGCCAGCTATCATCTCTGCAAGAATTACTTCTAATCGGGAATCCTTTTAGGAGCATACCTGCTGGGATCAATCAACTTTCTAGGCTGAGACTCCTTGATTTGGGTTACTGTGAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGGGTGCAAACGGCTGGAAACTTCTTCAGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCATTGATTCAGGATTTGGAATGCGAGATTTATCCTACAGAAAAATCTTTTGCCCAAGTAAATCTTATTTCAGACGGTAGTGGAATTCCAAATTGGATAAGCCATCACAAAAAGGGAGCTGAAGTAGTAGCAAAGCTTCCTCAAAATTGGTATAAAAATGACGACTTGTTGGGTTTTGTTTTGTACTGTGTCTATTATCCACTTGATAATGAATCTGAGGAGACACTGGATAATGATGCAACTTACTTCGAGTATGGTTTGACTTTGCGTGGTCGTGAAATTCAGTTTGTGGATGAACTCCAGTTTTTTCCCTCATTTCAATGCTATGTTGTACCACAAATGTGGATGATTTATTATCCTAAGCTTTTGATTGAGAAGAAGTACCACTCAAATAAATGCAGGGAGTTGACGGCTTCATTTTGTGGCTACTTGAGAGGTAAAGCAGTGAAAGTAGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAACAGAACCATGGTAAAGCAATGATATCCACCGTTTGCCGGGAATGTCAAGGGGATGTGCAATCCCGACGAAAGCTTTGTTTAAAGGGAAATGCCATCAATGAACTACCCACTATTGAGTGTCCCTTAGAACTTGATAGCTTATGTTTGCGGGAATGCAAAAACCTTGAGCATCTTCCCAGTAGCATATGTGAGTTGAAATCCCTTACAACTCTCTTCTGCTCAGGCTGTTCACGATTAAGGAGCTTTCCGGAAATCGTTGAGGATGTGGAAAATTTAAGAGTGCTTCATTTAGATGGAACTGCTATAGAAGAACTACCAGCATCAATTCAATATTTAAGAGGGCTTCAATATTTGAATCTTTCAGATTGCACCAACCTTGTGAGTCTTCCAGAAAGCATTTGTAATTTGAGTTCTCTCAAAACTCTAGATGTCAGTTTCTGTACAAAACTTGAGAAATTTCCTGAGAACCTGAGGAGTTTGCAATGTTTAGAGGATTTGCGTGCTTCAGGTCTAAATCTAAGCATGGACTGTTTTAGTAGCATACTTGCAGGCATCATTCAACTGTCTAAACTGAGAGTCCTTCAATTGAGTCACTGCCAGGGGCGTCGACAAGTTCCAGAGCTTCGGCCAAGTTTACGATATTTAGATGTCCACAGTTGCACATGCTTGGAAACTTCATCAAGTCCATCAAGTGAACTTGGTTTTTCTCTGTTCAAATGCTTCAAATCAATGATTGAGAGTGTGGGTACTATCTTATATATACACGTGATTGATGAGCAGAGAAGTTGTGATACCAGATCAGCAGCAGAAGATACTAATTCTAATGCACAAACAAGCTATGACTGGACACAGTGCACTGAGCATAGCGATTCTCCCATGGATACAACGACACAGATTATTAACAGTAATGTTGTTGATGCCCAAGATGATGAAGAGGATCATATGCACGACTGGTTGGAGCTTCTTTGCAAATTTGTTGGATGGATATGCTGCAGAAGATGCTAA 1833 40.59 MQGVVLSDICGLYSLQVLDLSVCCIDEGGIPTEFCQLSSLQELLLIGNPFRSIPAGINQLSRLRLLDLGYCEELRQIPALPSSLRVLDVHGCKRLETSSGLLWSSLFNCFKSLIQDLECEIYPTEKSFAQVNLISDGSGIPNWISHHKKGAEVVAKLPQNWYKNDDLLGFVLYCVYYPLDNESEETLDNDATYFEYGLTLRGREIQFVDELQFFPSFQCYVVPQMWMIYYPKLLIEKKYHSNKCRELTASFCGYLRGKAVKVEECGIHLIYAHDHEQNHGKAMISTVCRECQGDVQSRRKLCLKGNAINELPTIECPLELDSLCLRECKNLEHLPSSICELKSLTTLFCSGCSRLRSFPEIVEDVENLRVLHLDGTAIEELPASIQYLRGLQYLNLSDCTNLVSLPESICNLSSLKTLDVSFCTKLEKFPENLRSLQCLEDLRASGLNLSMDCFSSILAGIIQLSKLRVLQLSHCQGRRQVPELRPSLRYLDVHSCTCLETSSSPSSELGFSLFKCFKSMIESVGTILYIHVIDEQRSCDTRSAAEDTNSNAQTSYDWTQCTEHSDSPMDTTTQIINSNVVDAQDDEEDHMHDWLELLCKFVGWICCRRC* 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27859843 27862659 - Vvi18g1700 Vvi18g1700 781403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1700 610 Gene3D Ribonuclease Inhibitor 3 122 IPR032675 -
Vvi18g1700 610 Gene3D Ribonuclease Inhibitor 363 527 IPR032675 -
Vvi18g1700 610 Gene3D Ribonuclease Inhibitor 281 362 IPR032675 -
Vvi18g1700 610 Pfam C-JID domain 137 275 IPR045344 -
Vvi18g1700 610 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 1 457 - -
Vvi18g1700 610 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 450 523 - -
Vvi18g1700 610 SUPERFAMILY L domain-like 4 453 - -
Vvi18g1700 610 PANTHER OS11G0677101 PROTEIN 450 523 - -
Vvi18g1700 610 PANTHER OS11G0677101 PROTEIN 1 457 - -
Vvi18g1700 610 SMART LRR_typ_2 365 387 IPR003591 -
Vvi18g1700 610 SMART LRR_typ_2 37 60 IPR003591 -
Vvi18g1700 610 SMART LRR_typ_2 388 412 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1700 - - - vvi:104877471 1045.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1700 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .