Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1712 ATGTTAATTTGGCACCAGCCAACGGAGTTTGCATTTGCCAGCGTGATTAGCGCTTGTGGTGGGGACGACAATTGTGGACGGCAAGTACACGCGCTTGCATTGAAGACTTCTTTTGATTCTTGTGTTTATGTCGGGAATGCTCTTATTATGATGTATTGCAAGAGTTGTGGTGGCGCGGATGAGGCTTGGAATGTGTATGAGGCCATGGGGTTTCGCAATTTGGTTTCTTGGAATTCTATGATTGCAGGGTTTCAGGTCTGTGGATGTGGAAATCGCGCACTTGAGCTCTTCTCACAGATGCACGTTGGTGGAATTCGGTTTGATCGTGCCACACTGGTCAGCATTTTTTCTTGCTTGTGTGGAATGGGTGATGGTCTTGAATGTTGTTTTCAATTGCAGTGTCTTACTATAAAAACTGGGTTTATCTTAAAAATTGAAGTGGCCACTGCCTTGGTCAAGGCTTATTCTAGTCTAGGAGGAGAGGTCAGTGATTGTTATAGGATCTTCTTGGAATTGGATGGCCGTCAAGATGTTGTTTCTTGGACTGGGATCATAGCAGCGTTTGCAGAACGGGACCCAAAAAAAGCACTCGTCATCTTTCGGCAGTTTCTTCGAGAGTGTTTGGCTCCAGATCGTCATATGTTTTCCATTGTCTTGAAAGCTTGTGCTGGTCTTGCAACTGAGCGGCATGCATTGACTGTCCAGTCACATGTTCTAAAAGTTGGATTTGAGGATGACATTGTGCTTGCAAATGCCTTGATTCATGCCTGTGCTAGGTGTGGCTCTGTTGCATTGTCAAAGCAAGTTTTTGACAAAATGGGATCCCGTGATACAGTTTCTTGGAATTCAATGTTGAAGGCATATGCTATGCATGGGCAAGGTAAGGAGGCATTGCTGCTCTTTTCACAAATGGATGCTCAACCTGATGGCGCCACCTTTGTTGCCCTCCTCTCAGCTTGTAGTCATGCTGGAATGGCGGAAGAAGGAGCTAAAATATTTGAGACAATGTCTAACAATCATGGTATTGTTCCTCAACTTGATCATTACGCCTGCATGGTTGATATTCTTGGTCGAGCTGGTCAAATTTCTGAGGCAAAGGAGCTTATAGACAAAATGCCAATGGAGCCTGATTCAGTGGTCTGGAGTGCCTTGCTTGGAAGTTGTAGGAAACATGGTGAAACCAAGTTAGCCAAGTTAGCTGCAGTGAAACTAAAAGAGTTGGATCCCAACAATTCATTAGGATACGTATTGATGTCAAACATATTTTGTACAGATGGTCGTTTTAATGAAGCAAGATTAATAAGAAGGGAGATGGAAGGGAAGATAGTGAGAAAGGAACCAGGTTTGAGTTGGATTGAGGTTGGAAATCAGGTACATGAGTTTGCCTCTGGAGGCCAACAACATCCAGAAAAAGAGGCCATATGTGCCAGGCTTGAAGAGCTAGTTAGGCGATTGAAGGATTTGGGTTACATTATGAAGAATATCCGAATTTGTGTAGATTGCCATAACTTTATGAAGTTGGCATCCGAACTTGTTGACATGGAGATTGTTGTGAGAGATTCAAACCGTTTTCACCATTTTAAAGCGAAGGTGTGCTCTTGCAATGATTATTGGTGA 1617 43.48 MLIWHQPTEFAFASVISACGGDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFAERDPKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQMDAQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARLEELVRRLKDLGYIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27983867 27985625 + Vvi18g1712 Vvi18g1712 781415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1712 538 Pfam PPR repeat 251 276 IPR002885 -
Vvi18g1712 538 Pfam PPR repeat 279 304 IPR002885 -
Vvi18g1712 538 Pfam PPR repeat 75 104 IPR002885 -
Vvi18g1712 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vvi18g1712 538 Gene3D Tetratricopeptide repeat domain 316 446 IPR011990 GO:0005515
Vvi18g1712 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Vvi18g1712 538 Pfam E motif 391 453 IPR046848 -
Vvi18g1712 538 Pfam Pentatricopeptide repeat domain 305 356 IPR002885 -
Vvi18g1712 538 Gene3D Tetratricopeptide repeat domain 189 315 IPR011990 GO:0005515
Vvi18g1712 538 Gene3D Tetratricopeptide repeat domain 4 138 IPR011990 GO:0005515
Vvi18g1712 538 PANTHER - 2 488 - -
Vvi18g1712 538 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 2 488 - -
Vvi18g1712 538 Pfam DYW family of nucleic acid deaminases 490 538 IPR032867 GO:0008270
Vvi18g1712 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 344 IPR002885 -
Vvi18g1712 538 TIGRFAM PPR: pentatricopeptide repeat domain 75 108 IPR002885 -
Vvi18g1712 538 TIGRFAM PPR: pentatricopeptide repeat domain 279 305 IPR002885 -
Vvi18g1712 538 TIGRFAM PPR: pentatricopeptide repeat domain 312 344 IPR002885 -
Vvi18g1712 538 TIGRFAM PPR: pentatricopeptide repeat domain 349 372 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1712 - - - vvi:100263666 1065.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003263 1 7 1 2 2 0 1 0 1 2 1 0 2 1 2 2 0 2 1 0 1 2 2 1 1 1 2 1 0 2 41