Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1713 ATGCCAGAATTATCAAGCATGCCAAATCTTGAGGAGCTTAACCTCGTGTGTTGTGAAAGGTTGAAGAAATTTCCTGAGATCCGTGAAAATATGGGACGTTTGGAGAGAGTTCATTTAGATTGCAGTGGAATTCAGGAAATACCGAGCAGTATTGAGTACTTGCCAGCTCTTGAATTTCTTACACTTCATTATTGCAGAAATTTTGACAAATTTCCGGATAATTTTGGGAATTTGAGACATCTAAGGGTCATCAATGCAAACAGGACTGATATTAAAGAACTTCCTGAGATCCATAATATGGGAAGTCTAACGAAACTTTTTCTAATCGAGACTGCTATTAAAGAATTACCACGCTCAATAGGTCATCTCACCGAACTTGAGGAGTTAAATCTAGAAAATTGCAAAAATTTGAGGAGTCTTCCTAATAGCATTTGTGGGTTGAAATCACTTGGAGTCCTCAATCTCAATGGCTGTTCAAATCTGGTGGCTTTTCCAGAAATCATGGAGGATATGGAAGACTTAAGAGAACTTCTTTTAAGTAAAACGCCTATAACAGAGCTGCCACCATCAATTGAACATCTAAAAGGTCTTGAACACTTGGAATTGAAGAATTGTGAGAACCTTGTGACTCTTCCAGATAGCATTGGTAATTTGACACATCTTCGTAGTCTTTGTGTTCGTAACTGTTCGAAGCTCCACAATTTGCCCGACAATCTGAGAAGCTTGCAATGGTGCTTAAGAAGACTGGATCTAGCTGGTTGCAATCTGATGAAAGGAGCAATTCCTAGTGATTTATGGTGCCTATCCTTACTGAGATTTTTAGATGTGAGCGAAATCCCTATTCCTTGCATACCTACTAACATAATCCAACTCTCTAACCTGAGAACGCTTAGGATGAATCACTGCCAGATGCTTGAAGAAATTCCAGAGCTTCCATCAAGGCTAGAAATCTTAGAAGCACAAGGTTGTCCACATCTGGGAACTTTATCAACTCCTTCGAGCCCACTCTGGTCTTATCTCCTCAACCTCTTCAAATCACGTACTCAGAGTTGTGAATACGAAATAGACTCAGACTCCTTATGGTACTTCCATGTACCTAAAGTTGTTATTCCAGGAAGTGGTGGAATACCAAAGTGGATAAGTCATCCGAGTATGGGACGCCAAGCAATAATAGAGCTCCCAAAGAATCGGTATGAAGATAACAATTTCTTGGGATTTGCTGTTTTCTTCCATCATGTTCCACTTGATGATTTTTGGTCGCATTGGCATAGGCGTTTTCTACAATTTGAATTGAGGATATCCCATGATGATCAATCTGAACGGGTAATTAAAATAATGAGTTGTTTCCATTTTGAAACATGCCGTAGTAGTAGTTCATCATCTGAGGGTATATGCCTCGACAATGTTAGCACATCGGATCCACCATTGTGCGTGACCTATCTCCCTAAGTTTGCCATTCCAAGTGAGCATCGATACGCTAAGCGTAGTCAACGTGATACTATCCCAGTCGTTGAAGTGGAAATTTGTGGGATACATCTTATATACTCCAAAAATGATCACCAACAGAATCAGAGCCATTGGCGTGAAGCCATGATAAAAGATCAAGACATCTCCTGTGATTTCCAAGCTTCTCCCTACAGGTCCTTTCGGATGAAAGAAATCCCCAAGTGGATCAACGCGTGGAGGTCTAGTGAAAGCGACAGCTCTAATACAGAAGGCTCAGAATCAGAGAACTCTGATTACTATTCTGCTGACGAGGGGGACCCCACTGTTGACTGTTGA 1782 40.8 MPELSSMPNLEELNLVCCERLKKFPEIRENMGRLERVHLDCSGIQEIPSSIEYLPALEFLTLHYCRNFDKFPDNFGNLRHLRVINANRTDIKELPEIHNMGSLTKLFLIETAIKELPRSIGHLTELEELNLENCKNLRSLPNSICGLKSLGVLNLNGCSNLVAFPEIMEDMEDLRELLLSKTPITELPPSIEHLKGLEHLELKNCENLVTLPDSIGNLTHLRSLCVRNCSKLHNLPDNLRSLQWCLRRLDLAGCNLMKGAIPSDLWCLSLLRFLDVSEIPIPCIPTNIIQLSNLRTLRMNHCQMLEEIPELPSRLEILEAQGCPHLGTLSTPSSPLWSYLLNLFKSRTQSCEYEIDSDSLWYFHVPKVVIPGSGGIPKWISHPSMGRQAIIELPKNRYEDNNFLGFAVFFHHVPLDDFWSHWHRRFLQFELRISHDDQSERVIKIMSCFHFETCRSSSSSSEGICLDNVSTSDPPLCVTYLPKFAIPSEHRYAKRSQRDTIPVVEVEICGIHLIYSKNDHQQNQSHWREAMIKDQDISCDFQASPYRSFRMKEIPKWINAWRSSESDSSNTEGSESENSDYYSADEGDPTVDC* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28012082 28015625 + Vvi18g1713 Vvi18g1713 781416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1713 593 MobiDBLite consensus disorder prediction 562 580 - -
Vvi18g1713 593 PANTHER LEUCINE-RICH REPEAT-CONTAINING 211 497 - -
Vvi18g1713 593 PANTHER LEUCINE-RICH REPEAT-CONTAINING 140 239 - -
Vvi18g1713 593 PANTHER LEUCINE-RICH REPEAT-CONTAINING 5 155 - -
Vvi18g1713 593 Gene3D Ribonuclease Inhibitor 162 352 IPR032675 -
Vvi18g1713 593 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Vvi18g1713 593 MobiDBLite consensus disorder prediction 562 593 - -
Vvi18g1713 593 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515
Vvi18g1713 593 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 211 497 - -
Vvi18g1713 593 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 5 155 - -
Vvi18g1713 593 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 140 239 - -
Vvi18g1713 593 SUPERFAMILY L domain-like 3 327 - -
Vvi18g1713 593 Pfam C-JID domain 375 517 IPR045344 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1713 - - - vvi:100241404 1170.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00135 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24