Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1714 ATGAACTGTTTTCTTGAAACCGGTCAAACTACTTCTCTAAAACAGGCATACCATCAATCTTCTCCACCATATTCGCCTTCTCTGCTCTCACGACCACCTCCAAGAAGCTCTCAAACTCTTCTACTCCATCACCCCACCACCTCCACTTGTCCATTCCCACCACACCTACGCCGCTCTCTTCCACCCGTGCGCCCGCCGCAGTTCTCTCCCCATGGCCCAGCTCTCCACTGCCACATGCTTTTACACAACCCCAACTCTGATTTCAACCTCTTTCTGACCAATCATGTTGTCAACATGTATGCTAAATGTGGGTTATTGGATTATGCCCACCAATGGTTTGATGAAATGCTGGAGAGGAATATTGTTTCTTGGACTGCTCTCGTTTCTAGGTATGCCCAGCATGGTTGGCCTGATGAGTGTTTTAGGGTCTTTACGGACATGCTGATTTGTCACCGGCCAACGGAGTTTGCGTTTGCCAGCGTGATTAGCACTAGTGGCGGGGACGGCGACTGTGGACGGCAGGTACACGCGCTTGCAGTGAAGACTTCTTTTGATTCTTGTGTTTATGTGGGGAATGTTCTTATTATGATGTATTGCAGGAGTTGTGGTGGCACGGATGAGGCTTGGAATGTGTACGAGGCAATGGGGTTTCGCAATTTGGTTTCTTGGAATTTTATGATTACAGGGTTTCAGGTCTGTGGATGTGGAAATCGAGCACTTGAGATCTTCTCACAGATGCACTTTGGTGGAATTCGGTTCGATCGTGCCACACTGGTCAACATTTTTTCTTGCTTGTGTGGAATGGGTGATGGTCTTGAATGTTGTTTTCAATTGCAGTGTCTTACTACAAAAACTGGGTTTATCTCAGAAATTGAAGTGCCCACTGGCTTGGTCAAGGCTTATTCTAGTCTAGGAGGAGAGGTCAATGATTGTTATAGGATCTTCTTGGAATTGGATGGCCGTCAAGATGTTGTTTCTTGGACTGGGATTATAGCAGTGTTTGCAGAACGGGACCCAGAAGAAGCATTCCTCCTCTTTCGGCAGTTTCTTCGAGAGTGTTTGGCTCCAGATCGTCATATGTTCTCCATTGTCTTAAAAGCTTGTGCTGGTCTTGCAACTGAGGGGCATGCATTGACTGTCCAGTCACATGTTCTAAAAGTTGGATTTGAGGATGACATTGTGCTTACAAATGCCTTGATTCATACCTGTGCTAGGTGTGGCTCCGTTGCATTGTCAAAGCAAGCTTTTGACAAAATCGGATCCCGTGATACAGTTTCTTGGAATTCAATGTTGAAGGCATATGCTATGCATGGGCAAGGTAAGGAGGCATTGCAGCTTTTTTCACAAATGGATGCCCAACCTGATGGTGCCACCTTTGTTGCCCTCATCTCAGCTTGTAGTCATGCTGGAATGGTGGAAGAAGGAGCCAAAATATTTGAGGCAATGTCTAACAATCATGGTATTGTTCCTCAACTTGATCATTACGCCTGCATGGTTGATATTCTTGGTCGAGCTGGTCGAATTTATGAGGCAAAGGAGCTTATAGACAAAATGCCAATGGAGCCTGATTCAATGGTCTGGAGTGCTTTGCTTGGAGGTTGTAGGAAACATGGTGAAACCAAGTTTGCCAAGTTAGCTGCAGTGAAACTAAAGGAGTTGGATCCCAATAATTCATTAGGATACATATTGATGTCAAACATATTTAGTACAAATGGTCATTTTAATGAAGCAAGATTAATAAGAAGGGAGATGGAAAGGAAGACAGTGAGAAAGGAACCAGGTTTGAGTTGGATTCAGGTTGGAAATCAGGTACATGAGTTTGCCTCTGGAGGCCAACAACATCCAGAAAAAGAGGCCTTATGTGCCAGGCTTGAAGAGCTAGTTAGGCAATTGAAGGACTTGGGTTACGTGCCTCAAATAAGTTTGGCCTTGCATGACATAGAAGATGAGCATAAAGAGGAGCAACTGTATTACCACAGTGAGAAGATGGCTTTGGTTTTCTCTTTGATGAATGCAGGTAGTATATATTCAAACCGTTTTCACCATTTTAAAGCGAAGGTGTGCTCTTGCAATGATTATTGGTGA 2085 44.6 MNCFLETGQTTSLKQAYHQSSPPYSPSLLSRPPPRSSQTLLLHHPTTSTCPFPPHLRRSLPPVRPPQFSPHGPALHCHMLLHNPNSDFNLFLTNHVVNMYAKCGLLDYAHQWFDEMLERNIVSWTALVSRYAQHGWPDECFRVFTDMLICHRPTEFAFASVISTSGGDGDCGRQVHALAVKTSFDSCVYVGNVLIMMYCRSCGGTDEAWNVYEAMGFRNLVSWNFMITGFQVCGCGNRALEIFSQMHFGGIRFDRATLVNIFSCLCGMGDGLECCFQLQCLTTKTGFISEIEVPTGLVKAYSSLGGEVNDCYRIFLELDGRQDVVSWTGIIAVFAERDPEEAFLLFRQFLRECLAPDRHMFSIVLKACAGLATEGHALTVQSHVLKVGFEDDIVLTNALIHTCARCGSVALSKQAFDKIGSRDTVSWNSMLKAYAMHGQGKEALQLFSQMDAQPDGATFVALISACSHAGMVEEGAKIFEAMSNNHGIVPQLDHYACMVDILGRAGRIYEAKELIDKMPMEPDSMVWSALLGGCRKHGETKFAKLAAVKLKELDPNNSLGYILMSNIFSTNGHFNEARLIRREMERKTVRKEPGLSWIQVGNQVHEFASGGQQHPEKEALCARLEELVRQLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKMALVFSLMNAGSIYSNRFHHFKAKVCSCNDYW* 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28030021 28034687 + Vvi18g1714 Vvi18g1714 781417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1714 694 MobiDBLite consensus disorder prediction 15 38 - -
Vvi18g1714 694 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 76 650 - -
Vvi18g1714 694 PANTHER - 76 650 - -
Vvi18g1714 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 453 IPR002885 -
Vvi18g1714 694 Pfam PPR repeat 425 450 IPR002885 -
Vvi18g1714 694 Pfam PPR repeat 122 148 IPR002885 -
Vvi18g1714 694 Pfam PPR repeat 221 247 IPR002885 -
Vvi18g1714 694 Pfam PPR repeat 94 121 IPR002885 -
Vvi18g1714 694 Pfam PPR repeat 495 519 IPR002885 -
Vvi18g1714 694 Pfam PPR repeat 458 483 IPR002885 -
Vvi18g1714 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi18g1714 694 Gene3D Tetratricopeptide repeat domain 422 633 IPR011990 GO:0005515
Vvi18g1714 694 Gene3D Tetratricopeptide repeat domain 275 421 IPR011990 GO:0005515
Vvi18g1714 694 Gene3D Tetratricopeptide repeat domain 169 274 IPR011990 GO:0005515
Vvi18g1714 694 Gene3D Tetratricopeptide repeat domain 75 168 IPR011990 GO:0005515
Vvi18g1714 694 TIGRFAM PPR: pentatricopeptide repeat domain 425 451 IPR002885 -
Vvi18g1714 694 TIGRFAM PPR: pentatricopeptide repeat domain 122 148 IPR002885 -
Vvi18g1714 694 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Vvi18g1714 694 TIGRFAM PPR: pentatricopeptide repeat domain 94 122 IPR002885 -
Vvi18g1714 694 Pfam DYW family of nucleic acid deaminases 635 672 IPR032867 GO:0008270
Vvi18g1714 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Vvi18g1714 694 Pfam E motif 537 599 IPR046848 -
Vvi18g1714 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 490 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1714 - - - vvi:100263666 1133.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003263 1 7 1 2 2 0 1 0 1 2 1 0 2 1 2 2 0 2 1 0 1 2 2 1 1 1 2 1 0 2 41