Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1715 ATGCAGAGATCACGTAGAGCTCTTCTGCAACGAAGAGCTTTAGAGAAAGCTATCATCGGCCGGAGTCGGTTGTATAAGGTTTCATTGTCTTTGGTCTTTGTGTTGTGGGGCCTTGTCTTTCTTTTGAGCTTATGGATCAGTCATGGTGATGGATACCAAGATGGATCTGGCATGCCTCTCATTGGCATATCAACTTGGGATGAAGCAAAGCAGGGCCTTAATCTAGGTTCTTGTTCTGTTGATGAACATTCTTTGATAGAAACCAATTCTGACAATTCTTATGAAGGTTCCAGAAATGATGCTGAAACTAAGGATTTCACCAATGAATTACATAGCAAAGGAAATGTAAAATCTACCTTGCCTGATACCCCAAAGAATGACAGGTTATCCCGTGCTGTGCCACCGGGCCTTGATGAATTCAAGAGCAAGGCAATTAGTTATAAAAGTAAATCTGTAACTGGTCAGGCTGGAAACGTCATACATAGAGTAGAGCCTGGGGGTGCAGATTACAATTATGCTTCAGCTTCAAAGGGAGCGAAGGTCTTGGCTTCTAACAAGGAAGCAAAGGGTGCTTCAAATATTTTAGGCAAAGACAAGGACAAGTACCTTAGAAATCCCTGTTCTGCTGAAGAGAAATTTGTCGTTATTGAACTTTCAGAAGAAACCTTGGTGGATACTATTGAAATTGCAAATTTTGAGCATTACTCTTCTAATCCAAAAGATTTTGAGTTGCTGGGCAGTTCGGTTTTTCCAACAGATGAGTGGGTCAAGCTTGGGAATTTTACTGCTGCAAATGTGAAGCATGCTCAGAGGTTTGCTCTTCACGAGCCAAAATGGGTGAGATATCTAAAGTTAAATCTACTGAGCCATCATGGTACAGAATTCTATTGCACACTGAGTGTTGTGGAAGTATATGGAGTGGATGCTGTTGAGCGAATGCTGGAGGATTTGATCTCTGTTCAAGATAATCCATTTGTACCTGAGGAAATTACTGCTGAGAAAAAGTCAATTCCCTCCCAGCCGGAGCCCACTGAGGGTAATAATCTGTATCAGAAACCTGTTAAAATTCGTCATCAACAGGTTGGAAGGATGCCTGGGGACACTGTTCTTAAGATACTGATGCAAAAAGTTCAATCACTTGATTTAAGTTTGTCTGTTTTGGAGCGATACCTGGAGGATTTGAACTCCAGATATGGTAACATTTTCAAAGAATTTGACAAAGAAATTGAGGAGAAAGATGTTCTTCTGGAGAATATAAGATCAGACATAAGGAACTTCCTTGATAGCAAGGAGATTATTACCAAAGATGTCAGTGATCTTATTTCATGGAAATCCCTTGTTTCCCTACAGTTGGATAATCTACTCAAGGACAATGCTCTTCTCAGAGCGGAGGTCCAAAAGGTTCAGGAGGACCAGACACACATGGAGAATAAGGGTATTGCAGTGTTTCTTATATGCCTAATTTTCGGATTCTGGGCTTTTGCGAGGCTATTGGTAGATATGATGTTGAGTGTTTACATGGCGGTGAGTGTTAATAATAGATCAGATAAATCCAGGAATTTTTGTGGGACGAGCTCTTCCTGGGTATTCCTGCTATTGAGCTGTAGCATTATTATTGTGATCCTGTCATTATAA 1635 40.73 MQRSRRALLQRRALEKAIIGRSRLYKVSLSLVFVLWGLVFLLSLWISHGDGYQDGSGMPLIGISTWDEAKQGLNLGSCSVDEHSLIETNSDNSYEGSRNDAETKDFTNELHSKGNVKSTLPDTPKNDRLSRAVPPGLDEFKSKAISYKSKSVTGQAGNVIHRVEPGGADYNYASASKGAKVLASNKEAKGASNILGKDKDKYLRNPCSAEEKFVVIELSEETLVDTIEIANFEHYSSNPKDFELLGSSVFPTDEWVKLGNFTAANVKHAQRFALHEPKWVRYLKLNLLSHHGTEFYCTLSVVEVYGVDAVERMLEDLISVQDNPFVPEEITAEKKSIPSQPEPTEGNNLYQKPVKIRHQQVGRMPGDTVLKILMQKVQSLDLSLSVLERYLEDLNSRYGNIFKEFDKEIEEKDVLLENIRSDIRNFLDSKEIITKDVSDLISWKSLVSLQLDNLLKDNALLRAEVQKVQEDQTHMENKGIAVFLICLIFGFWAFARLLVDMMLSVYMAVSVNNRSDKSRNFCGTSSSWVFLLLSCSIIIVILSL* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28113532 28119091 + Vvi18g1715 Vvi18g1715 781418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1715 544 PANTHER GALACTOSE-BINDING PROTEIN 111 354 - -
Vvi18g1715 544 PANTHER GALACTOSE-BINDING PROTEIN 352 543 - -
Vvi18g1715 544 PANTHER GALACTOSE-BINDING PROTEIN 1 91 - -
Vvi18g1715 544 Gene3D - 182 317 - -
Vvi18g1715 544 MobiDBLite consensus disorder prediction 105 134 - -
Vvi18g1715 544 PANTHER MEMBRANE PROTEIN CH1 RELATED 352 543 IPR045120 GO:0016020
Vvi18g1715 544 PANTHER MEMBRANE PROTEIN CH1 RELATED 1 91 IPR045120 GO:0016020
Vvi18g1715 544 PANTHER MEMBRANE PROTEIN CH1 RELATED 111 354 IPR045120 GO:0016020
Vvi18g1715 544 SUPERFAMILY Galactose-binding domain-like 190 305 IPR008979 -
Vvi18g1715 544 Coils Coil 451 478 - -
Vvi18g1715 544 Pfam Sad1 / UNC-like C-terminal 185 307 IPR012919 -
Vvi18g1715 544 ProSiteProfiles SUN domain profile. 142 309 IPR012919 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1715 - - - vvi:100249908 990.334
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004020 3 6 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 4 1 44