Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1716 ATGGAGGCGATCGACGAGCTCGTGCAGCTGTCAGAGTCTATGCGCCAGGCCGCGGCGCTGCTGGCGGATGAAGATGTGGACGAGAATTCGAGTTCCAGTTCTTCTCGCAGGGGTTCGACTTTTCTTAACGTTGTGGCTCTTGGAAATGTCGGTGCTGGTAAATCTGCAGTTTTGAACAGTTTGATTGGACATCCTGTTTTGCCTACTGGAGAAAATGGTGCTACTCGGGCTCCAATATGTATTGATTTACAAAAGGATGGTTCCCTAAGCAGCAAGTCAATCATCTTACAAATTGACAACAAATCTCAACAAGTTTCTGCAAGTGCTCTTCGACATTCTCTCCAGGACAGGCTGAGTAAGGGTGCCTCAGGCAAGAGCCGAGATGAAATATATTTGAAGCTACGGACAAGTACAGCACCTCCTCTGAAACTGGTTGATTTGCCTGGATTGGATCAACGGATTATGGATGAGACATTGGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGGTACAAGAACAATCGGTGTAATTAGTAAAATAGATCAAGCTGCATCAGACCAGAAAATCCTTGCTGCTGTTCAGGCTCTCCTGTTAAATCAGGGTCCTAGAAGTACATCTGAAATGCCATGGGTTGCTTTAATTGGGCAATCTGTTTCAATTGCCTCTGCACAGTCTGGATCTGTTGGTTCTGAGAACTCGTTAGAAACTGCTTGGAGGGCTGAGAGTGAGAGTCTTAAATCCATACTGACGGGAGCCCCTCAAAGTAAGCTTGGGAGAATAGCTTTAGTGGATGCCCTGGCTCAGCAGATACGCAGTCGTATGAAAGTCCGACTTCCAAACCTCCTTTCTGGGTTACAAGGAAAGTCCCAAATAGTTGGGGATGAGTTAGCAAGGCTTGGTGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGGGTGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAAGGATTGTGTTAGAAGCTGATGGTTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGGTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGGTTGTGGCAATTGCAACTGCTGCACTAGATGTGTTCAAGAATGAAGCTAAGAAAATGGTGGTTGCCCTAGTGGATATGGAGCGAGCTTTTGTGCCCCCTCAACACTTCATTCGTTTGGTGCAAAGAAGGATGGAGAGACAGCGACGGGAAGAAGAGCTGAAGAACCGATCCTCAAAAAAAGGACATGAGGCAGAGCAATCGATTTTGAATAGGGCAACTAGTCCTCAAACTGGTGGTCAGCAATCCGGAGGAAGTTTGAAATCAATGAAGGATAAATCTGGTCAGTCAGAAAAAGAAACACAAGAGGGCTCAGCTTTGAAGATAGCTGGTCCTGGTGGTGAGATCACAGCAGGCTTTCTATTGAAGAAAAGTGAAAAAACTAATGGATGGAGCAGGCGATGGTTTGTTTTAAATGAAAAGACTGGCAAGCTTGGTTACACCAAAAAGCAAGAGGAAAGGCATTTCCGTGGTGTCATCACTTTAGAGGAATGTAACGTAGAGGAGGTTTCAGATGAGGAAGAACCTCCCCGAAAAAGTTCGAAGGATAAGAAGGCCAATGGGCCTGATTCAGGAAAGAACACCAGTCTTGTTTTCAAGATAACGAGCAAGGTTCCATATAAAACAGTTTTGAAAGCCCACAGTGCTGTGGTGCTTAAGGCAGAGAGTATGGCAGATAAAGTTGAATGGGTAAACAAGATAAGCAGTGTTATTCAACCTTCCAAAGGGGGTCAAATGAAAGGGGCATCCACTGAAGGTGGTCTTACCATGAGGCAAAGTCTTTCTGATGGTTCCCTGGATACAATGGTCCGAAGACCTGCCGACCCAGAAGAAGAACTTCGATGGATGTCTCAAGAAGTGCGTGGCTATGTTGAAGCGGTTTTAAACAGTCTGGCTGCTAATGTCCCTAAAGCAGTTGTTCTTTGCCAAGTTGAGAAAGCTAAGGAAGACATGCTAAATCAGTTGTACAGCTCAATCAGCGCACAAAGCACAGCAAGGATCGAAGAGCTCCTTCTAGAGGATCAGAATGTAAAGCGTAGGAGGGAGCGCTACCAGAAGCAGTCCTCCCTCCTTTCAAAACTAACTCGCCAACTCAGCATTCATGACAATCGGGCAACTGCTGCCTCTAGCTGGTCAAATGGTGTTGGTGGAGCAGAAAGCAGCCCAAAAACCAGTGGTCCATCCGGTGGTGATGACTGGAGATCAGCATTTGATGCTGCAGCCAATGGACCTGTTGACTACAACTCTGATTTGTCTCGGTCTGGTTCTAATGGTCACAGTCGGCATTACAGTGACCCAGCACAGAATGGTGATGTCAGCTCCGGCTCAAACTCCAGCCGCCGTACTCCCAACCGGCGGCCGCCAGCACCACCCCCGTCAGGTTCCTCAGGTTACAAATTTTTTTAG 2796 46.67 MEAIDELVQLSESMRQAAALLADEDVDENSSSSSSRRGSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPICIDLQKDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGASGKSRDEIYLKLRTSTAPPLKLVDLPGLDQRIMDETLVSDYAQHNDAILLVIVPAAQAPEIASSRALKIAKEYDGDGTRTIGVISKIDQAASDQKILAAVQALLLNQGPRSTSEMPWVALIGQSVSIASAQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRSRMKVRLPNLLSGLQGKSQIVGDELARLGEQMVHSSEGTRAIALELCREFEDKFLLHIAGGEGAGWKVVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDVVSAAANATPGLGRYPPFKREVVAIATAALDVFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKNRSSKKGHEAEQSILNRATSPQTGGQQSGGSLKSMKDKSGQSEKETQEGSALKIAGPGGEITAGFLLKKSEKTNGWSRRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEVSDEEEPPRKSSKDKKANGPDSGKNTSLVFKITSKVPYKTVLKAHSAVVLKAESMADKVEWVNKISSVIQPSKGGQMKGASTEGGLTMRQSLSDGSLDTMVRRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTARIEELLLEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRATAASSWSNGVGGAESSPKTSGPSGGDDWRSAFDAAANGPVDYNSDLSRSGSNGHSRHYSDPAQNGDVSSGSNSSRRTPNRRPPAPPPSGSSGYKFF* 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28120532 28137285 - Vvi18g1716 Vvi18g1716 781419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1716 931 MobiDBLite consensus disorder prediction 877 913 - -
Vvi18g1716 931 ProSiteProfiles GED domain profile. 743 836 IPR020850 -
Vvi18g1716 931 ProSiteProfiles PH domain profile. 577 702 IPR001849 -
Vvi18g1716 931 SMART PH_update 578 704 IPR001849 -
Vvi18g1716 931 PRINTS Dynamin signature 41 59 IPR022812 -
Vvi18g1716 931 PRINTS Dynamin signature 66 83 IPR022812 -
Vvi18g1716 931 PRINTS Dynamin signature 178 196 IPR022812 -
Vvi18g1716 931 PRINTS Dynamin signature 197 213 IPR022812 -
Vvi18g1716 931 MobiDBLite consensus disorder prediction 512 574 - -
Vvi18g1716 931 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 67 76 IPR019762 -
Vvi18g1716 931 SMART dynamin_3 1 237 IPR001401 GO:0003924|GO:0005525
Vvi18g1716 931 MobiDBLite consensus disorder prediction 512 530 - -
Vvi18g1716 931 Pfam Dynamin GTPase effector domain 741 823 IPR003130 GO:0003924|GO:0005525
Vvi18g1716 931 Pfam PH domain 582 701 IPR001849 -
Vvi18g1716 931 SUPERFAMILY PH domain-like 578 702 - -
Vvi18g1716 931 MobiDBLite consensus disorder prediction 531 554 - -
Vvi18g1716 931 CDD DLP_1 44 308 IPR001401 GO:0003924|GO:0005525
Vvi18g1716 931 MobiDBLite consensus disorder prediction 630 658 - -
Vvi18g1716 931 PANTHER DYNAMIN-2A 3 854 - -
Vvi18g1716 931 PANTHER DYNAMIN 3 854 IPR022812 -
Vvi18g1716 931 Gene3D Dynamin, middle domain 705 811 - -
Vvi18g1716 931 Coils Coil 797 817 - -
Vvi18g1716 931 MobiDBLite consensus disorder prediction 704 723 - -
Vvi18g1716 931 MobiDBLite consensus disorder prediction 835 858 - -
Vvi18g1716 931 Gene3D Dynamin, middle domain 335 541 - -
Vvi18g1716 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 317 IPR027417 -
Vvi18g1716 931 Gene3D - 567 704 IPR011993 -
Vvi18g1716 931 Gene3D - 40 324 IPR027417 -
Vvi18g1716 931 Pfam Dynamin family 44 208 IPR045063 -
Vvi18g1716 931 MobiDBLite consensus disorder prediction 635 652 - -
Vvi18g1716 931 Pfam Dynamin central region 261 499 IPR000375 -
Vvi18g1716 931 MobiDBLite consensus disorder prediction 835 931 - -
Vvi18g1716 931 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 38 308 IPR030381 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1716 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - vvi:100255051 1696.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g922 Vvi18g1716 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69