Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1717 ATGTTTAAGAAATCGTTGGAGGCGAAGTCGCAGCAGCGGTTGTCCGGCGCAGACCGCAAAAAGCTGAAGCGAACAATCAAAGAGCGATTTCGTAACGCCTCCGATTCTGAAATCGATTCGATTCTTCCTCCTAAGGCTGAGATAACAATTGTGAAGTTACAAAATCGAGTTCATTTGTATGGTGTGGAAGGTGGTTTTCCTATGTTTTTTGACATTGATGGGCGAGGAACAGAAATATTCCCAACAGTTTATGCCCTCTGGAAGGTTCCTGATCTTTTGCCTGCTTTCATCCTGAAGGGGGGTGAGGTTTCTCGTTTTGTCATTGGAGGTGCTGATCTGATGTTCCCTGGTATTAGCATTCCTGCTGAAGGGCTACCTTCATTTGCAGAGGGGGAGCCTTGGGCAGTTAAAGTTCCAGGCAATCTGGCTCCAATTGCTGTTGGGACCACAACTATGAGTAGCACTGCAGCATTAAAAGCTGGTCTGCGTGGAAAAGCTTTGAGAATAACTCATTACTATCGAGATTCACTCTGGGAATTAGTTGAGGGCCATTATGTGCCAAATGCAGGATTTTTAGAAGATGTTGTGTTTGAAGATCCTTCTTTGTCATCAGCTTGTCAGGCTTCTGATTCATGCGAAGGTGTTAATGAGGCTTCAAGTGATCCACAAAACGACATTAGCAATAAAAAAGAGGGTGAATCTGTTGATGTCTTGGATCTAACTTCGGAAGCTAACCCATCTTCAACAGCACAGCTTGATGTTAGCAATGATCCTGCTGAACAAATAACTGCCAATGTGGATGATCTGAAGGTAACTGATGAGGAGTCAAATGTTGAGGTTCATCACACTCTATCCACTGAAGATGTGGATGCACTTTTAGACAAATGTCTGTTGCAAGCCTTGCATACAACGGTTAAAGATAAAGACCTTCCAATGCCTGGAAGCACATTGTGGGCAGGCCATGTATTACCTTGTAGGCCTTCAGGCATCACACTTGATATAAAAAAGTCATCCTACAAGAAATTATCAAAGTGGCTACAGGCTAAATCCTCCACAACATTGATTTCAGTAAAAGAGGATAAACATAAAAAAGAGGTGGTATTAAATTCTGTCAACCGCAATCATCCAGAGTACACATCTTTCAGGCCTGAGAAACGGCAAGTGGAAAAAAGTGATCAGACCAGTGACCATGCTGCTAGTGAAAGTCGATCACATAAAACACTTGAAGTGGCTGAGATATACAAACCGAGTGTGCATGTCAATCCTATTTTTGCTTCTGTGGGAGTCGATACGGGGAAACTGTTCAGTGCCTCTGAAGCCACCGATATTGTCTTCAGATATATTGAGAAAGAAAATCTGGTCAAACCAACAGACAAATCCATGGTGGTATTAGATGCAATATTATGCGATGCTTTGTTCAAAGGAGCTATTAAAAAGGGATCAACTTACCCAACTGCAATTCATAAGAAGGAGTTAGGACATACCTTCGTGAATCGCATGCAAGCTCATCATGTAGTGACAAGAGGAGGTGAGTCAGTTGTTCGCAAAGGTGCCCTTAAAAATATTCAGATAATGACAGAACGGAGGCAGGGTAACAAGAAGGTGACTAAAGTCTCAGGGTTTGAATCATTCTTGATGGATGCTGAAGCTTTGGCATCAGAGTTGCAGAAGAAATTTGCTTGCAGTACGACAGTGGCAGAACTGCCAGGTAAGAAAGGACATGAAGTTCTGGTTCAAGGAGGTGTGATTGAAGATCTGGCAAAACATCTAGTTGAACAATATGGAATCCCAAAGAGATGCATTGAAGTGCTTGATAAAACTAAGAAATGA 1830 42.46 MFKKSLEAKSQQRLSGADRKKLKRTIKERFRNASDSEIDSILPPKAEITIVKLQNRVHLYGVEGGFPMFFDIDGRGTEIFPTVYALWKVPDLLPAFILKGGEVSRFVIGGADLMFPGISIPAEGLPSFAEGEPWAVKVPGNLAPIAVGTTTMSSTAALKAGLRGKALRITHYYRDSLWELVEGHYVPNAGFLEDVVFEDPSLSSACQASDSCEGVNEASSDPQNDISNKKEGESVDVLDLTSEANPSSTAQLDVSNDPAEQITANVDDLKVTDEESNVEVHHTLSTEDVDALLDKCLLQALHTTVKDKDLPMPGSTLWAGHVLPCRPSGITLDIKKSSYKKLSKWLQAKSSTTLISVKEDKHKKEVVLNSVNRNHPEYTSFRPEKRQVEKSDQTSDHAASESRSHKTLEVAEIYKPSVHVNPIFASVGVDTGKLFSASEATDIVFRYIEKENLVKPTDKSMVVLDAILCDALFKGAIKKGSTYPTAIHKKELGHTFVNRMQAHHVVTRGGESVVRKGALKNIQIMTERRQGNKKVTKVSGFESFLMDAEALASELQKKFACSTTVAELPGKKGHEVLVQGGVIEDLAKHLVEQYGIPKRCIEVLDKTKK* 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28144007 28159521 + Vvi18g1717 Vvi18g1717 781420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1717 609 MobiDBLite consensus disorder prediction 208 231 - -
Vvi18g1717 609 SUPERFAMILY eIF1-like 493 605 IPR036877 GO:0003743|GO:0006413
Vvi18g1717 609 ProSiteProfiles SWIB/MDM2 domain profile. 412 498 IPR003121 -
Vvi18g1717 609 MobiDBLite consensus disorder prediction 378 406 - -
Vvi18g1717 609 ProSiteProfiles PUA domain profile. 93 174 - -
Vvi18g1717 609 Pfam Translation initiation factor SUI1 520 597 IPR001950 GO:0003743|GO:0006413
Vvi18g1717 609 MobiDBLite consensus disorder prediction 208 223 - -
Vvi18g1717 609 Pfam Pre-PUA-like domain 2 90 IPR041366 -
Vvi18g1717 609 SUPERFAMILY SWIB/MDM2 domain 404 506 IPR036885 -
Vvi18g1717 609 MobiDBLite consensus disorder prediction 373 406 - -
Vvi18g1717 609 Gene3D SWIB/MDM2 domain 402 506 IPR036885 -
Vvi18g1717 609 ProSiteProfiles Translation initiation factor SUI1 family profile. 522 594 IPR001950 GO:0003743|GO:0006413
Vvi18g1717 609 CDD eIF2D_C 521 604 IPR039759 -
Vvi18g1717 609 SUPERFAMILY PUA domain-like 103 179 IPR015947 -
Vvi18g1717 609 Gene3D - 518 604 - -
Vvi18g1717 609 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 1 609 IPR039757 GO:0001731|GO:0003743
Vvi18g1717 609 Gene3D - 1 186 - -
Vvi18g1717 609 CDD eIF2D_N 9 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1717 K15027 EIF2D; translation initiation factor 2D - vvi:100260152 1197.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34