Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1718 ATGCTAGATACCGCCGGCGGCCATGTCCGCGCATCGCCAGATCTTCCATGGAGGGTCCGCCTTTCGCTTGCCATTATAACCACCATCTCCGACGCCTGTCTCCGCCGTGACGGCACTGTCAACCGCCGTCTCTTGAGCTTCCTGGACCTCAAAATCTCTCCCTCTGACAAACCAGTGAACGGCGTCACCACCTCCGACACCACAGTCGACCCCTCCCGGAACCTCTGCGCAGGCGGCAACCTCGCCCACCACGTGGCTGCAAGAGCCAGCGAGTTCAAATTCCGGAACTTGAAAATCCTCGGGCTGATACCGATACAGCCGTATTTCGGAGGAGAAGAGAGGACGGAATCCGAAATCCAACTCGCCGGATCTCCGATCGTGTCGGTGTGGCGTACAGACTGGTGTTGGAAGGCGTTTCTGCCGGAGGGTTCAGACCGAGACCATCCGGCGGCGAATGTGTTCGGGCCGAAATCGGGCGACATATCAGGGGTGAAATTCCCGAAAAGTTTGGTGTTTATCGGAGGATTTGATCCGTTAAAAGATTGGCAGAAGAGGTATTGTGAAGGAATGAAGAAAAATGGAAAAAAAGTGAAGGTGATTGAGTATCCAAATGCCATTCATTCCTTTTATGGGATTCCTCAATTGCCTGAATCACGCTTGTTTATCAAGGAGGTTAGAAATTTCATTTATTTTGAATAA 699 52.07 MLDTAGGHVRASPDLPWRVRLSLAIITTISDACLRRDGTVNRRLLSFLDLKISPSDKPVNGVTTSDTTVDPSRNLCAGGNLAHHVAARASEFKFRNLKILGLIPIQPYFGGEERTESEIQLAGSPIVSVWRTDWCWKAFLPEGSDRDHPAANVFGPKSGDISGVKFPKSLVFIGGFDPLKDWQKRYCEGMKKNGKKVKVIEYPNAIHSFYGIPQLPESRLFIKEVRNFIYFE* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28161872 28162865 + Vvi18g1718 Vvi18g1718 781421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1718 232 Gene3D alpha/beta hydrolase 7 76 IPR029058 -
Vvi18g1718 232 Gene3D alpha/beta hydrolase 77 231 IPR029058 -
Vvi18g1718 232 SUPERFAMILY alpha/beta-Hydrolases 76 229 IPR029058 -
Vvi18g1718 232 Pfam alpha/beta hydrolase fold 77 210 IPR013094 GO:0016787
Vvi18g1718 232 PANTHER ACETYL ESTERASE 12 75 - -
Vvi18g1718 232 PANTHER ACETYL ESTERASE 77 230 - -
Vvi18g1718 232 PANTHER ARYLACETAMIDE DEACETYLASE 77 230 - -
Vvi18g1718 232 PANTHER ARYLACETAMIDE DEACETYLASE 12 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1718 - - - vvi:100267163 329.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1718 . . . Bda03g00361 . Bpe04g00321 Bma04g00338 . . . . Cma09g01288 . . . Cpe06g00972 . . . . . . . . Cla08g00161 . Cec08g0097 Cco08g0221 . Cmu08g0153 Cre08g0140 . . . . . . . Cme09g00112 . . . . . . . . Sed10g1646 . Cmo09g01246 . . . Car09g01103 . . Bhi06g00128 Tan10g1852 Cmetu11g1682 . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . Lsi08g00162 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200