Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1719 ATGCCATTATATTTAGACTTTGGAGGTGCAGAAGGGTTCATCCTGTCTCCACGAACCAGAGAAATGTCCGGTACAGCCGGCGGCAAAGTCCGTAAATGGCCGGATCTTCCATGGAAGGTCCGACTCTTCGTCACAGCCTTTGGGTTCCTCACAGATGCTTCTTTCCGACGTAATGGCAAAGTCAACCGCTGTCTTATTAACCTCATTGATTGCAAAGTCCCCCCCTCCGACAGGCCAGTTAACGGCGTCACCACCTCCGACACCACAGTCGACCCCTCCCGGAACCTCTGGTACCGCTACTTCGTTCCAAGCGCAGCCGAGGCTGGCAGGATGCTTCCCGTTGTCGTCTACTTCCACGAGCACCGCTGCCCAGCTTCCGCCGGCGGCAACATCGCTCACCACGTGACTGCCAGAGCCGGGGAGCACAACTTACGAAACTTGCAAATTGCGGGAGTCATCCCGATACAGCCATATTTCGGCGGAGAAGAGAGAACAGAATCCGAAATTCAGCTCGAGGGAGCTCCGCTAGTGTCCATGAAGCGCACGGACTGGTGCTGGAAGGCGTTTCTGCCGGAGGGGTCGGATCGAGACCATCCGGCGGCGAATGTATTCGGGCCGAACTCGAGCGATATATCGGGGTTAAGGTTTCCGAAAAGTTTGGTGTTCATGGGAGGCTTGGATCCATTGAGAGACTGGCAGAAGAGGTATTGTGGAGGACTGAAAAGCAACGGAAAAGAAGTGAGGGAGGCTGATTATCCAAACGCCATGCACTCCTTTTATGCCTTCCCTGAACTGCCTGAATCAACTCTATTTCTGAGGGAGCTTCAAGATTTCATTTATCCTCAATAA 849 53.59 MPLYLDFGGAEGFILSPRTREMSGTAGGKVRKWPDLPWKVRLFVTAFGFLTDASFRRNGKVNRCLINLIDCKVPPSDRPVNGVTTSDTTVDPSRNLWYRYFVPSAAEAGRMLPVVVYFHEHRCPASAGGNIAHHVTARAGEHNLRNLQIAGVIPIQPYFGGEERTESEIQLEGAPLVSMKRTDWCWKAFLPEGSDRDHPAANVFGPNSSDISGLRFPKSLVFMGGLDPLRDWQKRYCGGLKSNGKEVREADYPNAMHSFYAFPELPESTLFLRELQDFIYPQ* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28167807 28168860 + Vvi18g1719 Vvi18g1719 781422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1719 282 PANTHER ARYLACETAMIDE DEACETYLASE 34 119 - -
Vvi18g1719 282 PANTHER ARYLACETAMIDE DEACETYLASE 126 280 - -
Vvi18g1719 282 PANTHER ACETYL ESTERASE 126 280 - -
Vvi18g1719 282 PANTHER ACETYL ESTERASE 34 119 - -
Vvi18g1719 282 Gene3D alpha/beta hydrolase 125 281 IPR029058 -
Vvi18g1719 282 Gene3D alpha/beta hydrolase 28 120 IPR029058 -
Vvi18g1719 282 SUPERFAMILY alpha/beta-Hydrolases 71 259 IPR029058 -
Vvi18g1719 282 Pfam alpha/beta hydrolase fold 126 260 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1719 - - - vvi:100855326 559.296
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1719 . . . . . . . . . . Cma01g00879 . Car01g00803 . . Cpe06g00949 . . . . . . . . Cla08g00168 . Cec08g0085 Cco08g0229 . Cmu08g0162 Cre08g0149 . . . . . . . Cme09g00114 . . . . . . . . Sed11g1771 Cmo01g00921 Cmo09g01210 . . . Car09g01079 . Cpe02g00985 Bhi06g00124 Tan10g1851 Cmetu09g1418 . . . . . . . . . . . Lsi08g00164 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200