Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1722 ATGAATATTTTGTTTTTGAGTTTAAGGCAAAACTTAGAGAGAGAGAAGGAAAGAAAGAAAATCAATGGCGTCGACAGTGGGATCAGGTCGGCGGTGCCGTTCTGGAGAGCAGCGGGGATGACGTACATATCTTACTCGAACATCTACGCGAATCTGGTGAGAAACTGCCTCAAGAAGCCATTCAAATCCGAAGACCTCACTCACGAGAAGGTCCATTTCTCCATTTCCAAATGGGATAATGGCGTTCCCCAGAAGCCCAGCTTCCACCAACGCACCTCAGCACACTGCCACCAACTCTATATTTGCTTGTGGAGAAACAACAGGAAAAAAGAACTAATAAAGTGA 345 45.51 MNILFLSLRQNLEREKERKKINGVDSGIRSAVPFWRAAGMTYISYSNIYANLVRNCLKKPFKSEDLTHEKVHFSISKWDNGVPQKPSFHQRTSAHCHQLYICLWRNNRKKELIK* 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28239145 28241275 - Vvi18g1722 Vvi18g1722 781425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1722 114 PANTHER ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL 29 92 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi18g1722 114 SUPERFAMILY Epsilon subunit of mitochondrial F1F0-ATP synthase 32 78 IPR036742 GO:0000275|GO:0015986|GO:0046933
Vvi18g1722 114 PANTHER ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL 29 92 - -
Vvi18g1722 114 Pfam Mitochondrial ATP synthase epsilon chain 34 81 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi18g1722 114 CDD F1-ATPase_epsilon 34 78 IPR006721 GO:0000275|GO:0015986|GO:0046933
Vvi18g1722 114 Gene3D ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial 34 89 IPR036742 GO:0000275|GO:0015986|GO:0046933
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1722 K02135 ATPeF1E, ATP5E, ATP15; F-type H+-transporting ATPase subunit epsilon - vvi:100248446 114.005
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1722 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .