Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1737 ATGTGCTTCTGGGTATTTATTGTGTGCAGTTTATCTTGGAGAAGCTGCATCTATCAGTTGCAATTTGCTCTTACAGGAGGAGCAAGTTACAGGGCGGAATATGAGGGAAATTTGAAGGAAATCCTTGGTTACACTAAGGATGATGTGGTATCAAGTGACTTTATCGGGGACCGCAGGTCGAGTATTTTTTATGCCAAGGCTGGAATTGCTCTGAATGACAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGTTTACAGTTGGTTAAGAAGAGGATGGAACAAGGAGGATGTTAAAGGAAAAGCTCAGTATAAACATACAGATTTTGTAAAAGCAGTGGTGCTGAAGATGCTGCTGAATTGTCCATTAAAGGTGTTCAACTTGAACACCGGAAGGTTCAACCTGGAAACATATCAATTCTTGGATACTGTTAAGAAACACTATGGCATCCGCATTGAATGCATGTTTCCAGATGCTGTTGAAGTTCAGGGCTTGGTGAGGAAAGTGAGACCCCACCTTCTAGCTGGGAAAATTTAA 543 41.07 MCFWVFIVCSLSWRSCIYQLQFALTGGASYRAEYEGNLKEILGYTKDDVVSSDFIGDRRSSIFYAKAGIALNDNFIKLVSWYDNEWVYSWLRRGWNKEDVKGKAQYKHTDFVKAVVLKMLLNCPLKVFNLNTGRFNLETYQFLDTVKKHYGIRIECMFPDAVEVQGLVRKVRPHLLAGKI* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28413582 28417917 - Vvi18g1737 Vvi18g1737 781440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1737 180 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 32 82 IPR020829 GO:0016620
Vvi18g1737 180 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 30 82 - -
Vvi18g1737 180 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 115 169 - -
Vvi18g1737 180 Gene3D HUPs 107 178 IPR014729 -
Vvi18g1737 180 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 28 89 - -
Vvi18g1737 180 Gene3D Dihydrodipicolinate Reductase; domain 2 25 84 - -
Vvi18g1737 180 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 28 89 IPR020831 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1737 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - vvi:100242264 104.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .