Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g174 ATGAATGTAACCGTCACAGCTATTGAAGCGGTTCTTCTACTCTGCGCTGGAATGACCGCGCTTTTTGTCCTCTACTTCGTCGTCTTCTGGTGCTTCGCCTTCCCCAACCAGTCCGAGTTGCGGCGGCAGGAGAAGTCGAGGGCGGATGAGGGACTGTCGACGTCGGAGCTTGAGAGACTGCCGAAACTTGCCGGAAAAGATATGACGGTGACGGGCATGGAGTGTGCGGTATGCTTGGAGGAGATCGAAGGTGACGAACTGGCCAGAGTGGTCCCGGCTTGCAATCACGCCTTTCATCTAGAATGCGCCGATACTTGGCTGTCTAAGCACTCGGTTTGTCCTCTTTGCCGAGCTCCAATCAGGCCTGAGTTTCATTACACATCTGAAAATCTCTGCTGA 399 53.88 MNVTVTAIEAVLLLCAGMTALFVLYFVVFWCFAFPNQSELRRQEKSRADEGLSTSELERLPKLAGKDMTVTGMECAVCLEEIEGDELARVVPACNHAFHLECADTWLSKHSVCPLCRAPIRPEFHYTSENLC* 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1721215 1721614 + Vvi18g174 Vvi18g174 779877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g174 132 SMART ring_2 75 116 IPR001841 -
Vvi18g174 132 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 132 IPR044675 -
Vvi18g174 132 Pfam Ring finger domain 74 117 IPR001841 -
Vvi18g174 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 123 IPR013083 -
Vvi18g174 132 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Vvi18g174 132 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 132 - -
Vvi18g174 132 SUPERFAMILY RING/U-box 74 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g174 K19037 ATL23; E3 ubiquitin-protein ligase ATL23 [EC:2.3.2.27] - vvi:104882588 230.335
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .