Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1743 ATGATGTCTAAACTCCTCCTCCTCCTCTGTTTTCTTTTCTTCCTCTCGTTTTCTCAACTTTTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTGTGCCCGCATCACCAGGCCATTGCTCTGCTCCACTTTAAGCAATCCTTTTCTATTGATAATTCCAAGTCTTGGAAGAAGGGTAGTGATTGCTGCTCATGGGATGGGGTCACATGTGATTGGGTGACAGGCCATGTAATTGAGCTGGACCTCACTGGGTTTGGTCGTTTCTCAAGCTTGACGCATCTCAATCTCTGTGACTCTGAATTTTCAGGCCCAATTTCACCAGAAATCTCTCACCTCTCCAACTTGCTTCACCTTGGAGGTATTTCCATCTCTTCAATTTTTCCTAATGGAGAGCTTCCCGCTTCAATTGGTAATCTAAAGTCTTTAAAGATTTTGGTTCTCCACAATTGTGGATTCTCAGGGTCCATCCCTTCTTCAATTGGAAATCTGAAAAATTTAATTTCATTAGGACTTGCTAGCAACAATTTTAGTGGGCAGCTTCCACCATCAATTGGAAATCTCACAAACCTTCAGGACTTATATTTCTCTGATAACTTTAACATGTTCAACGGGACAATACCATCTTGGTTGTATACTATGCCATCATTGGTGCAATATCTTTTTCTTTCTTCAAATAACTTCAGTGGCGTTTTGGAGACAAGCAACTTTGGAAAACTTAGAAACCTCACTTCGCTTGATCTCTCAAACAACATGCTCTCATTGACAACGTCCGACGATTCCAAGTCCATGTTACCCTACATTGAGAGTCTAGACCTTTCAAACAATAACATTAGTGGAATATGGTCATGGAATATGGGAAAGAATACATTGCAGTACTTGAATCTCTCTTATAACTTAATAAGTGGTGGAGAAATCTTATCGTTGTTTTGCAAAGCGAGTTCCATGAGAATTCTTGATTTAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTGTTCCAAAATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTTACAATGATTTCGAGGGTGACTTGCCTGAAATGTATCTGAGAAGTTTGAAAGCGACAATGAATTTGCTTGAATCATTGGACCTCTCTTCAAACAAGCTCATTGGGAGCATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCTGAAAACCATCTTACAGGATTTATACCTCGAGGAAATCATATTTTTCCAATCAATATGGTAACTTAA 1362 38.84 MMSKLLLLLCFLFFLSFSQLFSSSFSFSNSTKLCPHHQAIALLHFKQSFSIDNSKSWKKGSDCCSWDGVTCDWVTGHVIELDLTGFGRFSSLTHLNLCDSEFSGPISPEISHLSNLLHLGGISISSIFPNGELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNFNMFNGTIPSWLYTMPSLVQYLFLSSNNFSGVLETSNFGKLRNLTSLDLSNNMLSLTTSDDSKSMLPYIESLDLSNNNISGIWSWNMGKNTLQYLNLSYNLISGGEILSLFCKASSMRILDLKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAYNDFEGDLPEMYLRSLKATMNLLESLDLSSNKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRGNHIFPINMVT* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28461771 28464940 + Vvi18g1743 Vvi18g1743 781446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1743 453 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Vvi18g1743 453 SUPERFAMILY L domain-like 260 441 - -
Vvi18g1743 453 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Vvi18g1743 453 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 322 399 - -
Vvi18g1743 453 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 85 321 - -
Vvi18g1743 453 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 15 84 - -
Vvi18g1743 453 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 399 445 - -
Vvi18g1743 453 SUPERFAMILY L domain-like 34 321 - -
Vvi18g1743 453 Gene3D Ribonuclease Inhibitor 31 85 IPR032675 -
Vvi18g1743 453 Gene3D Ribonuclease Inhibitor 86 306 IPR032675 -
Vvi18g1743 453 Pfam Leucine Rich repeat 288 303 IPR001611 GO:0005515
Vvi18g1743 453 Pfam Leucine Rich repeat 322 335 IPR001611 GO:0005515
Vvi18g1743 453 Gene3D Ribonuclease Inhibitor 321 447 IPR032675 -
Vvi18g1743 453 SMART LRR_typ_2 214 238 IPR003591 -
Vvi18g1743 453 SMART LRR_typ_2 164 188 IPR003591 -
Vvi18g1743 453 SMART LRR_typ_2 265 287 IPR003591 -
Vvi18g1743 453 SMART LRR_typ_2 423 445 IPR003591 -
Vvi18g1743 453 SMART LRR_typ_2 399 422 IPR003591 -
Vvi18g1743 453 SMART LRR_typ_2 240 263 IPR003591 -
Vvi18g1743 453 PRINTS Leucine-rich repeat signature 268 281 - -
Vvi18g1743 453 PRINTS Leucine-rich repeat signature 423 436 - -
Vvi18g1743 453 Pfam Leucine Rich Repeat 402 422 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1743 - - K13468 vri:117905855 316.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g924 Vvi18g1743 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1743 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89