Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1744 ATGATGTCTAAACTCCTCCTCTATTTTCTTTTCTTCCTCTCGTCCTCTCAACTTCTTTCCACCTCTTTCTCTTTCTCTAATTCCACCAAACTCTGCCCTGGTCACCAATCTCGTGCTCTGCTCCACCTTAGGAAATCGTTTTCCGTTATTGATAATTCCAGTTTTTGGGGATGCGATTACTATGACCTCAGTTGCAGTTGGCTCTATGGCACCATCCATTCCAATAGTACCCTCTTTCTTTTTCCCCACCTGCGAAGGCTTAACCTTGCTTTCAATGACTTTAATGGGTCTTCTGTTTCCACTAGGTTTGGCCGCTTCTCAAGCTTGACCCATCTCAACCTCTCTGAATCTCTATTTTCAGGCCTAATTTCACCAGAAATTTCTCACCTCGCCAACTTGGTTTCACTCGATCTAAGCTTCACCTTGGAGGTATATCCATCTCTTCATTTCCATGATCATGACATTCATCTTCCAAAACTTGAGACTTTGGATCTCTCTATTTGCCAATTCTTAGGGTCCATCCCCACTTCCCTAGAGAACCTTAAACAAATCACATCCTTGAACCTTATTGGGAATCATTTTAGTGGTAAAATTCCAAATATTTTTAATAACCTTAGAAATTTAATTTCACTAGGACTTTCTAACAACAATTTTAGTGGTCATTTTCCACCATCTATTGGAAATCTAACAAACCTTTATGAGTTAGACTTCTCCAATAATCAGCTAGAAGGATTACATGGGCCAATTCCAAGTTCAATATTTAAGCTTGTAAACCTTAGATATCTTTATCTTTCTTCAAATAACTTGAGTGAGTCGCTAGACCTTTCAAACAATAAGATTAGTGGAGTATGGTCATGGAACATGGGAAATGATACACTATGGTACTTGAATCTCTCTTATAACTCAATAAGACCACTTCCAACTCCTCCAAATTCTACATTTTTCTTTTCAGTCTCCCATAACAAATTGAGTGGAGAAATCTCATCGTTGATTTGCAGAGCGAGTTCCATGGAAATTCTTGATTTGTCTGACAACAATTTGAGTGGCAGGCTTCCTCATTGTTTGGGAAATTTTATACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTTCAAAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGAGAGATTCCCAAGTCCATTGGAAATCTTAATTCCCTTCGAGGGCTCAATTTGTCTCATAACAACCTTGGAGGACATATTCCATCACCTTTAGGGAATTTGAAGTCGCTTGAATCATTGGACCTCTCTTCAAACAAGCTCATTGGCAGAATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAAAGTCAAGCTCTTTGGGTCCTAGTAATTGGCATGCGGGAAAGAAATTTCAACTGTGCCCATCTCATGCTCCTCTATTCTATTTTCTCCCAATGGAGAATCCTCATCACCATTTCTCTCATCCCACCTCACCCTCTCAATTGCTTTTGGGAAGAATGATGTCTAAACGCCTCCTCCTCTATTTTCTTTTCTTCCTCTCATCCTCTCAGCTTCTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCGCATCAGCAGGCTCTTGCTCTGCTCCACCTTAAGCAATCCTTTTCTATTGATAATTCCAGTTCTTGGGATTGTATTTCCATCTCTTCAGTTTTTCCTGATTCCTTGCTAAATCGTGAGAACAATTCCCTCATGGAATTGTATTTATCATCCAAAAATTTCAGTGGAGAGCTTCCTGCTTCAATTGGAAATCTAAAAAATTTAATTTCATTACACCTTCATGGCAACAATTTCAGTGGATATAACTTATTCAATGGGATAATACCATCTTGGTTGTATGCTCTACCATCATTGGTGGTATTATATCTCGATCATAACAAACTCACTGGTCATATTGGTGAATTCCAATCTGATTCATTGGAGTTGATTTGTTTGAAAATGAATAAGTTACATGGGCCAATTCCAATATGGTCATGGAATATGGGAAAGAATACACTGCAGTACTTGAATCTCTCTTATAACTCAATAAGTGGTGGAGAAATCTCATCGTTGATTTGCAAAGCGAGTTCCATGAGAATTTTTGATTTGTCTAATAACAACTTGAGCCCAGTACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGAGAGATTCCCAAGTCCATTGGAAATCTTAATTCACTTCGAGGGCTCAATTTGTCTCATAACAACCTTGCAGGACATATCCCATCATCTTTTGGGAATTTGAAGTTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTCATTGGGAGAATTCCTCAAGAATTAACGAGTTTGACATTTCTCGAAGTTTTGAATCTTTCCCAAAACCATCTTACTGGATTTATACCTCAAGGTAATCAGAGTGGAGCCCAAACAATTTATGTATCCCATAACAAATTGAGTGGAGAAATCTCATCATTGATTTGCAAAGTGAGTTCCATGGGAATTCTTGATTTGTCTAATAACAACTTGAGTGGCATGCTTCCTCATTGTTTGGGGAATTTTAGCAAAGATCTTTCTGTTTTGAATTTACGAAGGAATCGATTTCATGGCATCATTCCTCAAACATTTTTAAAGGACAATGCTATCAGGAATCTTGACTTCAACGATAATCAATTGGAAGGCTCAGTACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAGACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGAGAGATTCCAAAGTCCATTGGAAATCTTAATTCACTTCGAGGGCTCAATTTGTCTCATAACAACCTTGCAGGACATATCCCATCATCTTTTGGGAATTTGAAGTTGCTTGAATCATTAGACCTCTCTTCAAACAAGCTCATTGGGATAATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAATCCAGCCCAAACTGCACACATACTCCACTTCTTTCGAATACAATTTTGATTCAAGAAATAGATTATGATGGCTTAAATGAGATAAAATTTCAAGATAATAACAAAAATAAATAA 3282 37.63 MMSKLLLYFLFFLSSSQLLSTSFSFSNSTKLCPGHQSRALLHLRKSFSVIDNSSFWGCDYYDLSCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLNLSESLFSGLISPEISHLANLVSLDLSFTLEVYPSLHFHDHDIHLPKLETLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSGKIPNIFNNLRNLISLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGLHGPIPSSIFKLVNLRYLYLSSNNLSESLDLSNNKISGVWSWNMGNDTLWYLNLSYNSIRPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILDLSDNNLSGRLPHCLGNFIPRSLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSSNKLIGRIPQELTSLTFLEKSSSLGPSNWHAGKKFQLCPSHAPLFYFLPMENPHHHFSHPTSPSQLLLGRMMSKRLLLYFLFFLSSSQLLSSSFSFSNSTKLCPHQQALALLHLKQSFSIDNSSSWDCISISSVFPDSLLNRENNSLMELYLSSKNFSGELPASIGNLKNLISLHLHGNNFSGYNLFNGIIPSWLYALPSLVVLYLDHNKLTGHIGEFQSDSLELICLKMNKLHGPIPIWSWNMGKNTLQYLNLSYNSISGGEISSLICKASSMRIFDLSNNNLSPVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQSGAQTIYVSHNKLSGEISSLICKVSSMGILDLSNNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGIIPQTFLKDNAIRNLDFNDNQLEGSVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGIIPQELTSLTFLESSPNCTHTPLLSNTILIQEIDYDGLNEIKFQDNNKNK* 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28472200 28499501 + Vvi18g1744 Vvi18g1744 781447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 147 244 IPR032675 -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 245 313 IPR032675 -
Vvi18g1744 1093 SMART LRR_sd22_2 956 973 - -
Vvi18g1744 1093 SMART LRR_sd22_2 741 758 - -
Vvi18g1744 1093 SMART LRR_sd22_2 438 461 - -
Vvi18g1744 1093 SMART LRR_sd22_2 256 277 - -
Vvi18g1744 1093 SMART LRR_sd22_2 1028 1049 - -
Vvi18g1744 1093 SMART LRR_sd22_2 813 836 - -
Vvi18g1744 1093 SMART LRR_sd22_2 390 416 - -
Vvi18g1744 1093 SMART LRR_sd22_2 366 383 - -
Vvi18g1744 1093 SMART LRR_sd22_2 229 247 - -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 551 691 IPR032675 -
Vvi18g1744 1093 SUPERFAMILY L domain-like 758 1057 - -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 862 1089 IPR032675 -
Vvi18g1744 1093 Pfam Leucine Rich Repeat 338 358 IPR001611 GO:0005515
Vvi18g1744 1093 Pfam Leucine Rich Repeat 1031 1051 IPR001611 GO:0005515
Vvi18g1744 1093 Pfam Leucine Rich Repeat 440 461 IPR001611 GO:0005515
Vvi18g1744 1093 ProSiteProfiles Leucine-rich repeat profile. 258 279 IPR001611 GO:0005515
Vvi18g1744 1093 SUPERFAMILY L domain-like 79 456 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 733 782 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 863 995 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 990 1057 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 775 859 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 61 359 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 400 466 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 538 708 - -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 359 405 - -
Vvi18g1744 1093 SMART LRR_typ_2 256 279 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 719 741 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 615 636 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 837 860 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 438 462 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 789 812 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 157 181 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 1004 1027 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 813 836 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 1028 1052 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 956 980 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 229 252 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 390 414 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 883 906 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 765 788 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 645 667 IPR003591 -
Vvi18g1744 1093 SMART LRR_typ_2 205 228 IPR003591 -
Vvi18g1744 1093 ProSiteProfiles Leucine-rich repeat profile. 440 463 IPR001611 GO:0005515
Vvi18g1744 1093 SUPERFAMILY L domain-like 568 857 - -
Vvi18g1744 1093 Pfam Leucine rich repeat 957 1017 IPR001611 GO:0005515
Vvi18g1744 1093 Pfam Leucine rich repeat 742 802 IPR001611 GO:0005515
Vvi18g1744 1093 Pfam Leucine rich repeat 367 427 IPR001611 GO:0005515
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 30 146 IPR032675 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 990 1057 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 400 466 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 359 405 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 61 359 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 863 995 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 733 782 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 538 708 IPR045273 -
Vvi18g1744 1093 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 775 859 IPR045273 -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 780 859 IPR032675 -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 405 466 IPR032675 -
Vvi18g1744 1093 SUPERFAMILY L domain-like 246 360 - -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 692 779 IPR032675 -
Vvi18g1744 1093 Gene3D Ribonuclease Inhibitor 314 404 IPR032675 -
Vvi18g1744 1093 PRINTS Leucine-rich repeat signature 232 245 - -
Vvi18g1744 1093 PRINTS Leucine-rich repeat signature 438 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1744 - - - vvi:100256900 389.037
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .