Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1745 ATGAGAAATTTTAACAAGAAAGCTCTTGCTCTGCTCCACCTTAAGCAATCCTTTTCTATTGATAATTCCAGTTCTTGGGATTGTGATTCCAATGGCATCACTTCTTATCCTAAAACAGAGTCTTGGAAGAAGGGTAGTGATTGTTGCTCATGGGATGGGGTCACATGTGATTGGGTGACAGGCCATATAATTGGGCTGGACCTCAGTTGCAGCTGGCTCTTTGGCATCATCCATTCCAATAGTACCCTTTTCCTTCTTCCTCACCTGCGAAGGCTCAACCTTGCTTTCAATGACTTCAATTACTCCTCTGTTTCAATTGGGTTTGGTCGGTTCTCAAGCTTGATGCATCTCAATCTCTCCTACTCTCTCTTTTCTGGAAAAATTGCACCTGAAATCTTCCATCTCTCCAACTTGGTTTCACTTGATCTCTTAGATCTCAGTCTTAACAAACTCACTGGTCATATTGGTGAATTCCGATTTGATTCATTGGAGTATATTGATTTGAGCATGAATGAGTTACATGGGTCAATTCCAATATGGTCATGGAATATGGGAAAGGATACACTGCGGTACTTGAATCTCTCTTATAACATCATAAGCCCAGTACCTCGATCTTTGATCATTTGTCGAAAACTTAAAGTTCTAGACCTTGGGAATAATGTGATAAATGATACATTTCCCCATTGGTTGGGAACTCTTCCAAAGTTGCAAGTTCTTGTTTTGCGTTCTAATAGTTTTCATGAGATTGAATTTGTGAAAATCTTGGATACTTTCACAACAATTGATTTATCAAGCAATACATTCCAAGGAGAGATTCCAAAGTCCATTGGAAATCTTAATTCACTCCGAGGACTCAATTTGTCTCATAACAACCTTGTAGGACATATCCCACCATCTTTCAAAAATTTGAAGTTGCTTGAATCATTGGACCTTTCTTCAAACAAGCTCATTGGGAGAATTCCTCAAGAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCCCAAAACAATCTCACCGGATTTATACCTCGAGGCAATCAATTTGAGACATTTGGAAATGATTCATACAACGAGAACTTAGGGTTATCAAGAAGAAAGTAG 1107 38.39 MRNFNKKALALLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWVTGHIIGLDLSCSWLFGIIHSNSTLFLLPHLRRLNLAFNDFNYSSVSIGFGRFSSLMHLNLSYSLFSGKIAPEIFHLSNLVSLDLLDLSLNKLTGHIGEFRFDSLEYIDLSMNELHGSIPIWSWNMGKDTLRYLNLSYNIISPVPRSLIICRKLKVLDLGNNVINDTFPHWLGTLPKLQVLVLRSNSFHEIEFVKILDTFTTIDLSSNTFQGEIPKSIGNLNSLRGLNLSHNNLVGHIPPSFKNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENLGLSRRK* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28508787 28511552 + Vvi18g1745 Vvi18g1745 781448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1745 368 Gene3D Ribonuclease Inhibitor 2 105 IPR032675 -
Vvi18g1745 368 Gene3D Ribonuclease Inhibitor 106 368 IPR032675 -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 248 365 - -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 16 143 - -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 108 178 - -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 136 248 - -
Vvi18g1745 368 SMART LRR_typ_2 86 109 IPR003591 -
Vvi18g1745 368 SMART LRR_typ_2 279 302 IPR003591 -
Vvi18g1745 368 SMART LRR_typ_2 303 326 IPR003591 -
Vvi18g1745 368 SMART LRR_typ_2 327 350 IPR003591 -
Vvi18g1745 368 SMART LRR_typ_2 233 253 IPR003591 -
Vvi18g1745 368 PRINTS Leucine-rich repeat signature 306 319 - -
Vvi18g1745 368 PRINTS Leucine-rich repeat signature 327 340 - -
Vvi18g1745 368 Pfam Leucine rich repeat N-terminal domain 8 57 IPR013210 -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 108 178 IPR045273 -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 16 143 IPR045273 -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 136 248 IPR045273 -
Vvi18g1745 368 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 248 365 IPR045273 -
Vvi18g1745 368 Pfam Leucine rich repeat 259 316 IPR001611 GO:0005515
Vvi18g1745 368 Pfam Leucine rich repeat 188 245 IPR001611 GO:0005515
Vvi18g1745 368 Pfam Leucine Rich repeat 87 100 IPR001611 GO:0005515
Vvi18g1745 368 SUPERFAMILY L domain-like 47 345 - -
Vvi18g1745 368 Pfam Leucine Rich Repeat 330 346 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1745 - - - vvi:100854974 401.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g968 Vvi18g1745 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89