Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1746 ATGATTATTCTAACTTGGAATCATTTGCATATAAATTGGAGTGCACTTGTCACCATTTCTCTCATCTCATCACTCTTTCTCTCTATTGCTTTGGGAAGAATGATGTCTAAACTTCTCCTTTGTTTTCTTTTCTTTCTCTCGTCCTCTCAGCTTCTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCGCATCAGCAGGCTCTTGCTCTGCTCCACCTTAAGCAATCCTTTTCTATTGATAATTCCAGTTCTTGGGATTGCCATATAATTGGGCTGGACCTCACTGGGTTTGGTCGGTTCTCAAGCTTGACGCATTTCAATCTCTCTTACTCTGGATTTTCAGGCCTAATTGCACCAGAAATCTCTCACCTCTCCACCTTGGTTTCACTCGATCTGTCTGAGAATTATGGAGCAGAGTTTGCCCCGCATGGCTTCAATTCTCTGGTTCAAAATTTAACCAAATTGCAGAAGCTTCACCTTAGAGGTATTTCCATCTCTTCAGTTTTTCCTAATTCCTTGCTAAATCGGTCTTCTTTGATATCAATAGATCTCTCTGGCAACAATTTTAGTGGTCAGCTTCCACCATCAATTGGAAATCTAACAAACCTTCAAAACTTAAGATTCTCTAATAACTTGTTCAATGGGACAATACCATCTCAATTGTATACTCTGCCATCATTGGTGAATTTAGATCTCAGTCATAAAAAACTCACTGGTCATATTGGTGAATTCCAATTTGATTCATTAGAAAACCTCACTTTGCTTAGGCTAGACCTTTCAAACAATAAGATTAGTGGAATATGTGGGTTTGAGATGCTTCCATGGAAAAATATGCACATTCTAGATCTTCATTCCAACTTGTTGCAAGGACCACTTCCAATTCCTCCAAATTCTACATTTTTCTTTTCAGTCTCCCATAACAAATTGAGTGGAGAAATTTCACCCCTGATTTGCAAAGTGAGTTCCATGGGAGTTCTTGATTTGTCTAGTAACAACTTGAGTGGCATGCTTCCTCATTGTTTGGGAAATTTTAGCAAAGATCTCTCTGTTTTGAATTTACGAAGGAATAGATTTCATGGCACCATTCCTCAAACATTTTTAAAGGGCAATGCTATCAGAAATCTTGACTTCAACGATAATCAGTTGGAAGGCCTAATAAATGATACATTTCCTCATTGGTTGAGAACTCTTCCAGAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTTTTCCAAGATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCACAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAATGACAACAAAAGGGTTGGATGTTGAACTTGTGAAAATCTTGAATACTTTCACAACGGTTGATTTATCAAGCAACAAATTCCAAGGAGAGATTCCCAAGTCCATTGGAAATCTTAATTCACTTCGAGGGCTTAATTTGTCTCATAATAACCTTACAGGACTTATTCCATCATCTTTTGGAAATTTGAAGTCGCTTGAATCATTGGACCTCTCTTCAAACGAGCTAATTGGGAGTATTCCTCAACAATTAACAAGTTTGACATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTTACTGGATTCATACCTCGAGGTAATCAGTTTGACACTTTTGGAAATGATTCATACAATGAGAACTCAGGGTTGTGTGGATTTCCGTTGTCAAAGAAATGCATAGCTGATGAAACACCGGAGCCTTCAAAAGAAGCAGATGCAAAGTTTGATGGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGGTTATTGGGTTGTCTCTTGGGTGTCTCGTTTTCTTAACTGGGAAACCTAAATGCCTTGCTTTGCTCCACCTTAGGCAATCATTTTCTATTGATAATTATAGTTCTTGGTATTGCGATTTCAATGACATCACTTCTTATCCCAAAACAAAGCCTAATTTCACCAGAAATCTCTCACCTCTCCAACTTGTTCTCTATGATTGTGGATTGCATGGGAGATTCTCTAACCATGACATTCATCTTCTGAAACTCGAGGTTCTTGACTTATTGGAAAATAATGATCTCGGTGGGAACTTCCCACGATTCAGTGAGAACAATTCTCTTACCAAGTTGTATTTATCATCCAAAAATTTCAGTGGAGGGTTGCCTACTTCAATTGACAATCTAAAGTCTTTACAGACTTTGGATCTTGTCGATTGCGAATTCTCAAGTGGTCAGCTTCCACCATCAATTGGAAATCTAACCAACCTTCAAGATTTAGACTTCTCTAATAATCAACTAGAAGGAGTCATTCCTTCTCATGTAAATGGGTTTTTAAGTCTATCCTTTGTCAACTTAAGATATAACTTGTTCAATGGGACAATACCATCTTGGTTGTGTACTCTACCATCATTGGTACAGCTAGATCTCAGTCATAACAAACTCACTGGTCATATTGGTAAATTCCAATTTGATTCATTAAAGAAGATTGATTTGATTATGATGATCTCCAATAATAAATTAAGTGGAGAAATCTCACCATTGATTTGCAAAGTGAGTTCCATGGAAATTCTTGATTTGTCTAGTAACAACTTAAGTGGCATGCTTCCTCATTGTTTGGGAAATTTTAGCAAAGATCTCTCTGTTTTGAATTTACGAAGGAATCGATTTCATGGCATCATTCCTCAAACATTTTTAAAGGGTAATGTTATCAAGAATCTCGGTTTCAATGGTAATTAA 2778 37.37 MIILTWNHLHINWSALVTISLISSLFLSIALGRMMSKLLLCFLFFLSSSQLLSSSFSFSNSTKLCPHQQALALLHLKQSFSIDNSSSWDCHIIGLDLTGFGRFSSLTHFNLSYSGFSGLIAPEISHLSTLVSLDLSENYGAEFAPHGFNSLVQNLTKLQKLHLRGISISSVFPNSLLNRSSLISIDLSGNNFSGQLPPSIGNLTNLQNLRFSNNLFNGTIPSQLYTLPSLVNLDLSHKKLTGHIGEFQFDSLENLTLLRLDLSNNKISGICGFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPLICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLINDTFPHWLRTLPELQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRMTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIADETPEPSKEADAKFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPKCLALLHLRQSFSIDNYSSWYCDFNDITSYPKTKPNFTRNLSPLQLVLYDCGLHGRFSNHDIHLLKLEVLDLLENNDLGGNFPRFSENNSLTKLYLSSKNFSGGLPTSIDNLKSLQTLDLVDCEFSSGQLPPSIGNLTNLQDLDFSNNQLEGVIPSHVNGFLSLSFVNLRYNLFNGTIPSWLCTLPSLVQLDLSHNKLTGHIGKFQFDSLKKIDLIMMISNNKLSGEISPLICKVSSMEILDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGIIPQTFLKGNVIKNLGFNGN* 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28516116 28528636 + Vvi18g1746 Vvi18g1746 781449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1746 925 SMART LRR_typ_2 323 346 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 535 558 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 815 839 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 767 791 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 865 888 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 155 178 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 487 510 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 511 534 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 203 227 IPR003591 -
Vvi18g1746 925 SMART LRR_typ_2 252 275 IPR003591 -
Vvi18g1746 925 Gene3D Ribonuclease Inhibitor 631 919 IPR032675 -
Vvi18g1746 925 Gene3D Ribonuclease Inhibitor 66 301 IPR032675 -
Vvi18g1746 925 ProSiteProfiles Leucine-rich repeat profile. 256 277 IPR001611 GO:0005515
Vvi18g1746 925 Pfam Leucine Rich Repeat 538 554 IPR001611 GO:0005515
Vvi18g1746 925 SUPERFAMILY L domain-like 649 925 - -
Vvi18g1746 925 ProSiteProfiles Leucine-rich repeat profile. 489 510 IPR001611 GO:0005515
Vvi18g1746 925 Pfam Leucine rich repeat 467 524 IPR001611 GO:0005515
Vvi18g1746 925 Pfam Leucine rich repeat 769 828 IPR001611 GO:0005515
Vvi18g1746 925 PRINTS Leucine-rich repeat signature 257 270 - -
Vvi18g1746 925 PRINTS Leucine-rich repeat signature 511 524 - -
Vvi18g1746 925 SMART LRR_sd22_2 815 836 - -
Vvi18g1746 925 SMART LRR_sd22_2 865 891 - -
Vvi18g1746 925 SMART LRR_sd22_2 254 275 - -
Vvi18g1746 925 SMART LRR_sd22_2 511 530 - -
Vvi18g1746 925 SMART LRR_sd22_2 767 785 - -
Vvi18g1746 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 99 242 - -
Vvi18g1746 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 185 613 - -
Vvi18g1746 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 846 925 - -
Vvi18g1746 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 660 845 - -
Vvi18g1746 925 Gene3D Ribonuclease Inhibitor 302 588 IPR032675 -
Vvi18g1746 925 SUPERFAMILY L domain-like 91 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1746 - - - vvi:100255139 754.207
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1746 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89