Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1752 ATGTCTTATAGCTATTCAGACCCACCAAGCTGCTGCTCAGCTTCTGCTGAATTGAAGCTCTACCAGGCCTTCATCTTCTCTGTTCCAATCTTCTTCACCTTCATTCTCCTTTTGTTGTTCTACCTCTTCTATCTTCGCCGTCGGAGGGTCGATTGGGCTTCGCTTCGGATGCGATCTTCTATGCAGAACGATGCCGATCATGCTTCTGGAGTGTCTGAATTGGGCTTGAAGAAAGAAGTGAGAGAGATGCTTCCCATTATTGTATTCAAGGAAAGCTTCTCTGTCAGTGATACACAGTGCTCAGTATGCCTGGCTGATTATCAAGCAGAGGACAGGCTCCAACAGATACCTGCATGTGGGCACACATTTCATATGGACTGCATCGACCACTGGCTCGCCACCCACACCACCTGCCCACTCTGCCGCCTTTCCCTCACTGCAGCTGCCAGAACTCCGGCTGAACCGCTCACTATCCTAGTAGAAACACCTCATGGAACTTCCCCAGAACAAACACAGCCTGATACACAAGTCTCCCAGCCCAGGAATGAAAATGAAAGAGCTGTTCATACCACCACCATGGAAGCAGAGGGAGGAAGCTCTGAATGTGATGACTGTGAGACTGGAACCAGAGATGCAAGGAATGAGAATGAGAGGCATGAAGTGTAG 666 49.4 MSYSYSDPPSCCSASAELKLYQAFIFSVPIFFTFILLLLFYLFYLRRRRVDWASLRMRSSMQNDADHASGVSELGLKKEVREMLPIIVFKESFSVSDTQCSVCLADYQAEDRLQQIPACGHTFHMDCIDHWLATHTTCPLCRLSLTAAARTPAEPLTILVETPHGTSPEQTQPDTQVSQPRNENERAVHTTTMEAEGGSSECDDCETGTRDARNENERHEV* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28686084 28689667 + Vvi18g1752 Vvi18g1752 781455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1752 221 Pfam Ring finger domain 99 142 IPR001841 -
Vvi18g1752 221 SUPERFAMILY RING/U-box 84 152 - -
Vvi18g1752 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Vvi18g1752 221 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 175 - -
Vvi18g1752 221 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vvi18g1752 221 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 10 175 - -
Vvi18g1752 221 MobiDBLite consensus disorder prediction 163 186 - -
Vvi18g1752 221 SMART ring_2 100 141 IPR001841 -
Vvi18g1752 221 MobiDBLite consensus disorder prediction 203 221 - -
Vvi18g1752 221 CDD mRING-H2-C3H2C2D_ZSWM2 99 142 - -
Vvi18g1752 221 MobiDBLite consensus disorder prediction 163 221 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1752 K19039 - vvi:100251770 422.165