Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1753 ATGGGTTCGTTTGAGAACACAGTTTATTACTGCTGTGTGTCGAAGGGTAATAGAATTTTGTATGCATATGGTGGTGGAGGCCATGAGATTGAGAATTTGGCTGCCTTGTGCTTGGAAAGAGCTCCTCCCTTTCACAAATGGTATTTTCAGACCATGGGCAAGAAAACTTTTGGATTTTTGATGGAAGATGGGCATGTTTATTTTGCAATTGTAGATGAGGGTCTTGGAAACCCGGGAGTTCTACAGTTTCTAGAACACATGAGAGATGAATTCAAGAAGGTAGCTAGAAAGGATTCTAGGGGAAGTCCTTCAAGTTTTAACTCACTCCATATACAAGATCAACTGGTGCCCATTATCCACCGCTTGATCTCCTCATTAGAGCATGTTTCTCAGACTAGTAATAATTGGATAGCCGATGATGCAAATGGGCAAATGGAAGCTGCCAGTTCTACAAAAGCCCCATTGTTAGGAAAGTTTAGCAAGCAAGAGAAGAAGAAGAAGATGAAGGATCCTGTCATTGCAATGAGAGACATTGAGTTGGAGGAGCACCGGAAGTCCACAGACAGAGGAATCAAGATAGATTCGGGGAATTCGGATTCCAATAGCCAAGTGCATAGAGGTGATTATCTAGCGTTTCCTTTCTCCTATCAAACAAAGTTGTAA 663 41.93 MGSFENTVYYCCVSKGNRILYAYGGGGHEIENLAALCLERAPPFHKWYFQTMGKKTFGFLMEDGHVYFAIVDEGLGNPGVLQFLEHMRDEFKKVARKDSRGSPSSFNSLHIQDQLVPIIHRLISSLEHVSQTSNNWIADDANGQMEAASSTKAPLLGKFSKQEKKKKMKDPVIAMRDIELEEHRKSTDRGIKIDSGNSDSNSQVHRGDYLAFPFSYQTKL* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28693227 28694490 + Vvi18g1753 Vvi18g1753 781456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1753 220 CDD Longin 9 109 IPR010908 -
Vvi18g1753 220 PANTHER PHYTOLONGIN PHYL1.2 1 202 - -
Vvi18g1753 220 SMART Longin_2 33 112 IPR010908 -
Vvi18g1753 220 Gene3D Longin domain 3 132 - -
Vvi18g1753 220 MobiDBLite consensus disorder prediction 184 204 - -
Vvi18g1753 220 SUPERFAMILY SNARE-like 8 99 IPR011012 -
Vvi18g1753 220 PANTHER PHYTOLONGIN PHYL1.2 1 202 IPR044783 GO:0016021
Vvi18g1753 220 ProSiteProfiles Longin domain profile. 44 93 IPR010908 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1753 - - - vvi:100853487 393.275
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1753 . . . . . . . . . . . . . . Sed03g0691 . . Bhi04g02540 Tan11g0053 Cmetu03g1265 . Hepe02g3461 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00791 Cam11g0824 Cec11g0806 Cco11g0812 Clacu11g1033 Cmu11g0894 Cre11g1268 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014170 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 23