Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1756 | ATGATGAAGCTCAAGCAGTTGTTACAGTCCAGGACCCATTTGTCTGAAAATCTTTTGCATGGGAAACCTGGTGATATTAGAAATCCTTCATGGTTGCATGCTTTTACATCTCGGGTTAGCCTTTCAACTGCCACAGACCATTTTGCTGATAAAGGAAATTACCCAGACCGAGTATATGCTCCTTATTGTGTTTACAAGGGCAAAGCTTCATTGACCGTGTACCCTGTTCTCCCAAAATTCTCTAGATTGGATTCTGGAGGTCTGAAAGTTGATCGCCATGGTGTCATGATGCTGCAATTCTCACCTGCTGTGGGTGAGCGCAAGTACGACTGGGAGAAGAAGCAGTTCTTTGCATTGTCAGCGGTAGAGGTTGGGTCTCTATTAAGTTTGAGTCCTGGAGGTGGTTGTGAATTTTTCCATGATCCTTCAATGAAAACAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAGTTAAGTCTATGGATGGTGGTAGCTATTTTCTTTCTCTGTCTGTTGTGAACAATATTCAAAAAACCAATGAGCGCCTTGCTGTTCCTCTCACAGCTGCAGAATTTGCAGTGATGCAGACAGCTTGCAGTTTTGCTCTTCCCCACATTTTGGGATGGGATCGGTACATGAATCAAAAGCTACCAAGAACAGAAGCAACTCCATCAACTTTAGAATGGGACAGATGA | 696 | 43.39 | MMKLKQLLQSRTHLSENLLHGKPGDIRNPSWLHAFTSRVSLSTATDHFADKGNYPDRVYAPYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDWEKKQFFALSAVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKSLSVKSMDGGSYFLSLSVVNNIQKTNERLAVPLTAAEFAVMQTACSFALPHILGWDRYMNQKLPRTEATPSTLEWDR* | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 28739955 | 28746106 | - | Vvi18g1756 | Vvi18g1756 | 781459 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1756 | 231 | Pfam | Whirly transcription factor | 64 | 197 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Vvi18g1756 | 231 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 56 | 222 | IPR009044 | GO:0003677|GO:0006355 | |
Vvi18g1756 | 231 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 1 | 222 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Vvi18g1756 | 231 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 1 | 222 | - | - | |
Vvi18g1756 | 231 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 48 | 222 | IPR009044 | GO:0003677|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14299 | PF08536 | Whirly | 4.40E-55 | CL0609 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1756 | - | - | vvi:100258449 | 462.225 |