Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1756 ATGATGAAGCTCAAGCAGTTGTTACAGTCCAGGACCCATTTGTCTGAAAATCTTTTGCATGGGAAACCTGGTGATATTAGAAATCCTTCATGGTTGCATGCTTTTACATCTCGGGTTAGCCTTTCAACTGCCACAGACCATTTTGCTGATAAAGGAAATTACCCAGACCGAGTATATGCTCCTTATTGTGTTTACAAGGGCAAAGCTTCATTGACCGTGTACCCTGTTCTCCCAAAATTCTCTAGATTGGATTCTGGAGGTCTGAAAGTTGATCGCCATGGTGTCATGATGCTGCAATTCTCACCTGCTGTGGGTGAGCGCAAGTACGACTGGGAGAAGAAGCAGTTCTTTGCATTGTCAGCGGTAGAGGTTGGGTCTCTATTAAGTTTGAGTCCTGGAGGTGGTTGTGAATTTTTCCATGATCCTTCAATGAAAACAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAGTTAAGTCTATGGATGGTGGTAGCTATTTTCTTTCTCTGTCTGTTGTGAACAATATTCAAAAAACCAATGAGCGCCTTGCTGTTCCTCTCACAGCTGCAGAATTTGCAGTGATGCAGACAGCTTGCAGTTTTGCTCTTCCCCACATTTTGGGATGGGATCGGTACATGAATCAAAAGCTACCAAGAACAGAAGCAACTCCATCAACTTTAGAATGGGACAGATGA 696 43.39 MMKLKQLLQSRTHLSENLLHGKPGDIRNPSWLHAFTSRVSLSTATDHFADKGNYPDRVYAPYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDWEKKQFFALSAVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKSLSVKSMDGGSYFLSLSVVNNIQKTNERLAVPLTAAEFAVMQTACSFALPHILGWDRYMNQKLPRTEATPSTLEWDR* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28739955 28746106 - Vvi18g1756 Vvi18g1756 781459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1756 231 Pfam Whirly transcription factor 64 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi18g1756 231 SUPERFAMILY ssDNA-binding transcriptional regulator domain 56 222 IPR009044 GO:0003677|GO:0006355
Vvi18g1756 231 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi18g1756 231 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 222 - -
Vvi18g1756 231 Gene3D Transcriptional Coactivator Pc4; Chain A 48 222 IPR009044 GO:0003677|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14299 PF08536 Whirly 4.40E-55 CL0609 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1756 - - vvi:100258449 462.225