Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1757 ATGGCGGCTTTAAATTATCAGCTCAATGGATCTAAATTAGGGACCGTCAATGATGCTTTATATAAGGAACTTTGGCATGCCTGTGCTGGGCCTCTGGTTAATGTACCTCGTGAACAGGAACGTGTTTATTACTTTCCTCAAGGCCATATGGAACAGCTTGAAGCATCGATGCATCAGGGGCTGGACCAGAAGATGCCTTCATTCAATTTACCATCTAAGATCCTATGCAAAGTAGTTAATGTTCACCTTCGGGCTGAACCTGAAACTGATGAAGTTTATGCACAAGTTACATTGTTGCCTGAACCAGATCAAAGTGAGATAACTTCTCCAGATCCTCCACTTCCTGAACCTCAAAGTTGCACTGTCCATTCATTTTGTAAGACACTTACCGCTTCCGACACAAGCACTCATGGGGGATTCTCTGTTCTTCGGAGGCACGCAGATGAATGCTTGCCACCATTGGATATGTCCCAGAATCCACCATGGCAAGAATTGGTTGCTAAAGATTTGCATGGAAATGAATGGCATTTTCGTCATATTTTTCGAGGTCAACCTAGACGTCATCTGCTCACAACTGGATGGAGTGTTTTTGTTAGTTCTAAGAGATTAGCAGCTGGCGATGCATTTATATTCCTTAGAGGAGAAAATGGAGAATTGCGTGTTGGAGTTCGGAGGCTCATGAGACAACTGAACAATGTGCCACCATCTGTAATATCAAGTCACAGCATGCATCTTGGAGTCCTTGCTACTGCATCTCATGCCATCACTACTGGTACCCTATTTTCCGTCTTCTACAAACCAAGGGCAAGTCCATCCGAGTTTATCGTTAGTGTCAACAAGTACCTTGAAGCTCGAAACCACAAGGTTTCTGTGGGTATGAGATTTAAGATGAGATTTGAAGGTGATGAGGCTCCAGAAAGGAGGTTCAGTGGCACAATAGTCGGTGTTGGAGATACTGGATCATCAGGATGGACAGATTCTGAGTGGAGATCCTTAAAGGTTCAATGGGATGAGCCTTCTTCCATCTTGAGGCCAGAAAGGGTATCGCCATGGGAATTGGAGCCACTTGTGACAGAAACTCCTTTGACAGCTCAACCAATGCAAAGAAGCAAACGGCCACGATCACCAGTTTTATCTTCGCCAACCCCAGGCCTTTCAGCTTTTGCTGTGAAGACCAACTCTCATAGCTTTACTGTTAACTACTCAAGTACTGCTGTTTCCAACAATTCAGCATATTGGCCCCAACAATCCGAGCCTGTGCCTGAATTGTTTACCCCAGTTCCCAATAAAGAATATGGAAAAAAGAAACCAGAAAATGGCAATGGCTATAGGTTATTTGGGATTCAACTGGTTGACAATTCCAACGTGGAAGAAACTTTGCCTGTCACGACCATCTCTTCTGGTGCTGGCGAGGATCAGCCAGTTGTCTGTTTGGATGCTGACTCTGACCATCAATCTCAACGTTCAAATATTAATCAATCCAAAACTCCTACTGTTGGCAGCGATCCTGAGAAGTCATGCCTGGGATCTTCTCTACTGCAAAGTCGGCAAATACGAAGCTGCACTAAGGTTCACATGCAAGGCATGGCTGTTGGAAGGGCTGTGGATTTGACACAGTTTAGCAGCTACAAAGAGCTTCTCAGCAAACTCGAAGAGATGTTTGACATCAAAGGTGAGCTCTGCGGACCCACCAAAAAATGGCAGGTCGTCTACACTGATGATGAGGATGATATGATGATGGTTGGAGATGACCCTTGGCATGAGTTCTGCAGTATGGTAAGGAAGATCTTCATATACACAGTGGAGGAAGTCAAGGAACTGTCTCCAAAGGCGAAACTTCCACTCAAGGGAGAATTCAAACCAGGCAAGCCAGATTCTAAGACGACGATTGGCACTGAAGATCACTCGTCCATGGTGGGGTCTGGATTTTGA 1932 44.98 MAALNYQLNGSKLGTVNDALYKELWHACAGPLVNVPREQERVYYFPQGHMEQLEASMHQGLDQKMPSFNLPSKILCKVVNVHLRAEPETDEVYAQVTLLPEPDQSEITSPDPPLPEPQSCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQNPPWQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLAAGDAFIFLRGENGELRVGVRRLMRQLNNVPPSVISSHSMHLGVLATASHAITTGTLFSVFYKPRASPSEFIVSVNKYLEARNHKVSVGMRFKMRFEGDEAPERRFSGTIVGVGDTGSSGWTDSEWRSLKVQWDEPSSILRPERVSPWELEPLVTETPLTAQPMQRSKRPRSPVLSSPTPGLSAFAVKTNSHSFTVNYSSTAVSNNSAYWPQQSEPVPELFTPVPNKEYGKKKPENGNGYRLFGIQLVDNSNVEETLPVTTISSGAGEDQPVVCLDADSDHQSQRSNINQSKTPTVGSDPEKSCLGSSLLQSRQIRSCTKVHMQGMAVGRAVDLTQFSSYKELLSKLEEMFDIKGELCGPTKKWQVVYTDDEDDMMMVGDDPWHEFCSMVRKIFIYTVEEVKELSPKAKLPLKGEFKPGKPDSKTTIGTEDHSSMVGSGF* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28749591 28756756 - Vvi18g1757 Vvi18g1757 781460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1757 643 MobiDBLite consensus disorder prediction 361 382 - -
Vvi18g1757 643 MobiDBLite consensus disorder prediction 615 643 - -
Vvi18g1757 643 CDD B3_DNA 123 225 IPR003340 GO:0003677
Vvi18g1757 643 SUPERFAMILY DNA-binding pseudobarrel domain 114 254 IPR015300 -
Vvi18g1757 643 MobiDBLite consensus disorder prediction 360 382 - -
Vvi18g1757 643 ProSiteProfiles PB1 domain profile. 519 612 IPR000270 GO:0005515
Vvi18g1757 643 SMART B3_2 125 227 IPR003340 GO:0003677
Vvi18g1757 643 Pfam Auxin response factor 251 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi18g1757 643 MobiDBLite consensus disorder prediction 615 630 - -
Vvi18g1757 643 Gene3D - 122 227 IPR015300 -
Vvi18g1757 643 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 605 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi18g1757 643 Gene3D - 514 608 - -
Vvi18g1757 643 Pfam AUX/IAA family 488 609 IPR033389 -
Vvi18g1757 643 SUPERFAMILY CAD & PB1 domains 522 596 - -
Vvi18g1757 643 PANTHER AUXIN RESPONSE FACTOR 1 17 605 - -
Vvi18g1757 643 MobiDBLite consensus disorder prediction 482 505 - -
Vvi18g1757 643 Gene3D - 288 360 - -
Vvi18g1757 643 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Vvi18g1757 643 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14300 PF02309 AUX_IAA 3.00E-12 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1757 K14486 - vvi:100263592 1312.36