Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g176 ATGTCTCTGTCTGCACAAGCTCTCGCTCTACTCGACAGTGTTCAGCATACCATTTTCAATTGCCTAAATTCAACCACGGCTTCTCTTTCACAGACACGTCAAGCTCATGCCCACATCCTCAAGACCGGACTCTTCAACGATACCCATCTCGCCACCAAGCTTCTATCGCATTATGCTAATAACATGTGCTTTGCGGATGCAACTCTTGTTCTTGATTTGGTTCCTGAGCCCAATGTCTTCTCTTTCTCCACCCTTATTTATGCATTCTCAAAGTTTCATCAATTCCATCACGCACTTTCTACTTTTTCTCAGATGCTCACCCGAGGCCTCATGCCTGACAATCGTGTCCTCCCTAGTGCTGTCAAGGCCTGTGCTGGACTATCCGCCCTTAAGCCTGCCCGACAGGTTCATGGCATTGCATCTGTATCTGGGTTTGATTCAGATTCTTTTGTTCAATCTTCTTTGGTCCACATTTGGAGTGCTTTGGTTGCGGCTTATGCTCGGCAGGGATGTGTAGATGAGGCAAAAAGGCTTTTCAGTGAGATGGGTGACTCGGGTGTGCAGCCCAATTTAATATCATGGAATGGTATGATCGCGGGGTTCAATCATAGCGGACTATATTCGGAGGCTGTTCTAATGTTTCTGGATATGCATTTAAGAGGGATGGAACTGAATGTGGTATCTTGGACATCAATGATTGCTTGTTGCTCCCAAAATGGGAGGGATATTGAAGCTCTGGAGCTTTTTAGAGAGATGCAGATTGCAGGGGTGAAACCAAATTCTGTAACAATCCCTTGCTTACTACCAGCTTACAAATCGCATCCTCAAATGACCCAAATTATTGAAAAGTTGGATAAATTGAGCATGGAGATGAAGAAATTGGGTTATTTTCCAGAAATCAATTTTGTGCTGCAAGATGTAGAGGAACAGGACAAGGAGCAGATCTTGTGTGGGCACAGTGAGAAGTTGGCGGTGGTGTTCGGGCTTCTGAACACTCCCCCAGGATATCCACTTCAAGTAATTAAGAACCTCAGAATTTGTGGGGACTGCCATGTTGTTATAAAATTTATATCTAGCTTTGAAAGGAGGGAGATTTTTGTTAGAGATACAAACCGCTTTCATCACTTTAAAGAGGGAGCTTGTTCTTGTGGTGATTATTGGTGA 1164 44.16 MSLSAQALALLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHIWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPAYKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1729782 1732607 - Vvi18g176 Vvi18g176 779879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g176 387 Pfam DYW family of nucleic acid deaminases 295 387 IPR032867 GO:0008270
Vvi18g176 387 Gene3D Tetratricopeptide repeat domain 4 147 IPR011990 GO:0005515
Vvi18g176 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Vvi18g176 387 PANTHER OS05G0370000 PROTEIN 26 113 - -
Vvi18g176 387 PANTHER OS05G0370000 PROTEIN 273 373 - -
Vvi18g176 387 PANTHER OS05G0370000 PROTEIN 157 271 - -
Vvi18g176 387 PANTHER OS05G0370000 PROTEIN 107 148 - -
Vvi18g176 387 Pfam PPR repeat 158 187 IPR002885 -
Vvi18g176 387 Pfam PPR repeat 192 221 IPR002885 -
Vvi18g176 387 Pfam PPR repeat 80 110 IPR002885 -
Vvi18g176 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Vvi18g176 387 Gene3D Tetratricopeptide repeat domain 148 294 IPR011990 GO:0005515
Vvi18g176 387 Pfam PPR repeat family 225 269 IPR002885 -
Vvi18g176 387 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 107 148 - -
Vvi18g176 387 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 157 271 - -
Vvi18g176 387 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 113 - -
Vvi18g176 387 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 273 373 - -
Vvi18g176 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vvi18g176 387 TIGRFAM PPR: pentatricopeptide repeat domain 192 226 IPR002885 -
Vvi18g176 387 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Vvi18g176 387 TIGRFAM PPR: pentatricopeptide repeat domain 80 113 IPR002885 -
Vvi18g176 387 TIGRFAM PPR: pentatricopeptide repeat domain 158 190 IPR002885 -
Vvi18g176 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g176 - - - vvi:100248977 425.631
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068911 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1