Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1760 ATGGTGAAGCAACAACCACTGTGGTCTGCAGCAGTGCTGCTCCTGCTGCTGCTTAGTCTACAATTCTCGACTCAGGTTGCAAGATCGCAGAGGGTTCCGGCGATCTTTTGTTTTGGAGACTCGTTGATAGATGATGGCAACAACAATTTCCTGGACTCCATAGCCAAATCAAACTACTACCCTTACGGGATTGATTTCAGAGGCCCTACTGGCAGGTTTTGTAATGGGAAAACCATTGTTGATCTACTTGCTGAGATGTTAGGTGTTTCATATCCTCAACCTTTCGCAGATCCTGGCTCAACAGGGTCCAAAATATTTAGTGGAGTGAATTATGCTTCAGCAGCTGCTGGCATCCTTGATGAAACTGGCCAAAACTACGGACAAAGGTTTAGCTTGAGCCAACAGGTGCTGAACTTTGAGACCACATTGAGCCAAATGAGAACAATGGCGAATGGAACAACTCTGAGTCGGTACTTGGCCAAATCCATAGTTATAATGGTTTTCGGGAGCAATGACTACCTCAACAACTACCTCATGCCTTCCCTCTACCCTTCCAGCTACAACTACAGTCCCCCGGATTTCGCCAACCTCCTCCTCAACCATTATGCACGGCAAATTTTGGCACTGTATAGTTTAGGGTTAAGGAAGTTCTTCCTAGCCGGGATTGGACCACTTGGTTGCATGCCAAACCAGCGAGCCTTGGCGCCGCCCGGTCGATGTCTCGACTACGATAATCAGATACTTGGTACCTTCAATGAAGGGCTCAGGGCACTCGTCAACCAGCTGAATGGGAACCATCCTGGCTCCATCTTTGTGTATGGCAATACTTATGGTATTTTTGGTGACATTCTCAATAATCCTGCTACTTATGGGTTCAGTGTAGTGGATAGAGGGTGCTGTGGACTAGGAAGAAACCAAGGGCAGATAACATGTCTGCCTATGCAAATGCCATGCCTAAACAGGAATGAATATGTGTTTTGGGATGCCTTCCATCCAACCACGGCTGCCAATGTCATCCTTGCTCAAACGGCCTTCTATGGTCCTCCCTCTGATTGCTACCCCATCAATGTCCAGCAAATGGCTCTCATTTAA 1092 47.25 MVKQQPLWSAAVLLLLLLSLQFSTQVARSQRVPAIFCFGDSLIDDGNNNFLDSIAKSNYYPYGIDFRGPTGRFCNGKTIVDLLAEMLGVSYPQPFADPGSTGSKIFSGVNYASAAAGILDETGQNYGQRFSLSQQVLNFETTLSQMRTMANGTTLSRYLAKSIVIMVFGSNDYLNNYLMPSLYPSSYNYSPPDFANLLLNHYARQILALYSLGLRKFFLAGIGPLGCMPNQRALAPPGRCLDYDNQILGTFNEGLRALVNQLNGNHPGSIFVYGNTYGIFGDILNNPATYGFSVVDRGCCGLGRNQGQITCLPMQMPCLNRNEYVFWDAFHPTTAANVILAQTAFYGPPSDCYPINVQQMALI* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28788083 28791193 - Vvi18g1760 Vvi18g1760 781463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1760 363 SUPERFAMILY SGNH hydrolase 35 343 - -
Vvi18g1760 363 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 12 362 - -
Vvi18g1760 363 Pfam GDSL-like Lipase/Acylhydrolase 35 342 IPR001087 GO:0016788
Vvi18g1760 363 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 12 362 - -
Vvi18g1760 363 CDD SGNH_plant_lipase_like 33 348 IPR035669 -
Vvi18g1760 363 Gene3D SGNH hydrolase 20 346 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1760 - - - vvi:100267169 723.776
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1760 Blo01g01690 Blo12g00809 . Bda03g00365 Bpe02g00252 . Bma04g00342 Bma01g02456 . . . Cma09g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37