Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1768 ATGATTGTGAACGAGATCAGGCCATTCAAGAGGGCCAAGAGGAGAAGCACCTCAGATCTCTGCGATTTTCTCAGTTTTCCCTCCGTTTCCGGCGACGGGGACGGTGACTGCTTCGCCGAGCAGCCGTTTTGGTCAGCGGTACAGAGTTTCTTGAAGCAGTATGGGCATTCGAGGTTTCCGCCGTCTCTGTTTCCGTCGCTGGTGACGTGGCAGATATTGTTGCGAGTCGGTGATCCGGCAGATGGCGCCGGGGTTGTATCGCTTGATGTTGTTGAAGAAGACGTTGCCAGATCTAGATCTGTGTACTGCGATCAGTGCCGTGTTGTTGGTTGGAGTGGTCATCCAGTATGCCGAAAGCGATACCATTTCATAATAAGAGCGAATAGTAATCCTATAAAAGGATCCCACAGAGCATGCACGAAGTGTGGGAATATGACATATTTGTCTGATTCAAGGTGCAAGTTGTGCAACACTGCACTTACTGTAGATGAGCTTGAAGATTGGGTTTATCATCAATTTGAGGATACAACCCATCTGTTACATGGTGTAGTTCATTCAAATGGCTATGGTCACCTTCTTAGAGTCAATGGCAGAGAAGGCGGCGCTGACATTCTTTCTGGATTTGATATCATGAACTTCTGGGATAGGCTGTGTAAAAGGCTAGCTGTCAGCAGGAAAGTAAGCGTGATGGACTTGTCAAAAAAATATGGAACCGAGTACCGCCTACTTCACACGGTTGCAAAAGGCCAAGTGTGGTACGGCCACTGGGGCTATCAATTTGGAACCGGGAGCTATGCTCTCACCTCAGACGCTTACCAGAATGCAATCCACACCCTCTCCAACATCCCCCTATCTACATTCTTTTTCCAAGGCCGAGGTCCCCGAACCCACCTCCAAACTCTAATCGCATTCTACCAGTCCTTAGCCGAAACCGAACTCCGAACATTGAAGGACCTCTTCTCCTTTTTGTTGAACCGCATCAGCGAACTCAATACAGCAAAATCTGAGGACCAAACATCGAGCCATTATCAGAACCTGCTATGTGCTTGGGCAAGGAATGATGTGGAAAGGGTGGAGCAGTGTATGGTTAAGGTGCTAGTAACGTCAGCCACTGCTGAAAAGGGCAAGTGGGTGAGTCGGCGCACTCTCAAGGGCGCTCTTTACAAGGCGGCCTCTCCAGAGCTCATCGATTACTGCCTTAAACATCTAGTTGGAAGGGTGACAGGCGATGGCATGGTAGTTCGCACCCGTTACAATCCTAATTCTAATGCGGTCGAGTTCAGGATTGAGCCACAGAGCTGCATAAACAACAGCATTAGGGTAGACAGCTTGGACTCGAACTCAAGCCTTCCATCCAAAGGGCAAGTTATTGATGATCTAAGATATTTATACAATTCCATACTCAACCCCCAGACCATGGTGACCTACAGACCTAAGGCGACAAGGGAATTGGCGGTTGAATCGGCTAAGAAGCTTCTAGACTGCAAGCAGTTCATTAAGGACTACAAGGTCGAACGAGTTGCAGTTAAAAACCCCTTTGCAATCCACCTCTGGTGTCACGTGGAGCTTGAAGATTACTCCCAAGATTACCCCTTCCCTCCTCCGGAACTTCTTGTACTACCAACAAACGCTACCATAACTGATCTAAAACGTGAAGCTACAAAAGCCTTTAAGGAAGTTTACGTTGTCTTTAAGAGGTTTTATATTCAAGAACTCCCTGACTTTGGCCGCATAGAAGGCAGTGTGACTTTGAACCTTTTGTTTGGATCAAGAGGGTCTGTCCGGATCCGAGGAAGATGCAATGCAAAATATGGCCTTGGCCGGTTCCAGGCAGAGAGGGGTACAGAGACCTGGATAGTTGACTGCATCTGTGGGACTAAGGATGATGACGGTGAAAGAATGTTGGCGTGTGACAAGTGCAGTGTATGGCAGCATACGAGGTGTGTAGGGATTGAGAATTCCGATGAAATCCCTGCAAAATTTCTATGCGAGAGATGTTTGGGCTCTTCTTGTGCAGAAACCAAGTGTTCCAGTGGAAGTAGTAGTCCTAGGGGGGAGGAGGTGGAGGCAGAGTATGAGTGTCTCATTGACGGGGTGGAATCCAGGATTTTGAAAAATGAGGCTAATACTATTTTACCATCTGGAAGAACTTGCAGAGATGAAATCAAAGCAAAGGGTCTAGGACTCGTATCCAGGATGTGTATGACATTTGGTGTTCAGTAA 2223 47.59 MIVNEIRPFKRAKRRSTSDLCDFLSFPSVSGDGDGDCFAEQPFWSAVQSFLKQYGHSRFPPSLFPSLVTWQILLRVGDPADGAGVVSLDVVEEDVARSRSVYCDQCRVVGWSGHPVCRKRYHFIIRANSNPIKGSHRACTKCGNMTYLSDSRCKLCNTALTVDELEDWVYHQFEDTTHLLHGVVHSNGYGHLLRVNGREGGADILSGFDIMNFWDRLCKRLAVSRKVSVMDLSKKYGTEYRLLHTVAKGQVWYGHWGYQFGTGSYALTSDAYQNAIHTLSNIPLSTFFFQGRGPRTHLQTLIAFYQSLAETELRTLKDLFSFLLNRISELNTAKSEDQTSSHYQNLLCAWARNDVERVEQCMVKVLVTSATAEKGKWVSRRTLKGALYKAASPELIDYCLKHLVGRVTGDGMVVRTRYNPNSNAVEFRIEPQSCINNSIRVDSLDSNSSLPSKGQVIDDLRYLYNSILNPQTMVTYRPKATRELAVESAKKLLDCKQFIKDYKVERVAVKNPFAIHLWCHVELEDYSQDYPFPPPELLVLPTNATITDLKREATKAFKEVYVVFKRFYIQELPDFGRIEGSVTLNLLFGSRGSVRIRGRCNAKYGLGRFQAERGTETWIVDCICGTKDDDGERMLACDKCSVWQHTRCVGIENSDEIPAKFLCERCLGSSCAETKCSSGSSSPRGEEVEAEYECLIDGVESRILKNEANTILPSGRTCRDEIKAKGLGLVSRMCMTFGVQ* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28932157 28939425 + Vvi18g1768 Vvi18g1768 781471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1768 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 672 IPR013083 -
Vvi18g1768 740 SMART PHD_3 621 667 IPR001965 -
Vvi18g1768 740 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 690 - -
Vvi18g1768 740 SUPERFAMILY FYVE/PHD zinc finger 613 667 IPR011011 -
Vvi18g1768 740 Pfam PHD-finger 622 667 IPR019787 -
Vvi18g1768 740 ProSitePatterns Zinc finger PHD-type signature. 622 666 IPR019786 -
Vvi18g1768 740 CDD PHD_MMD1_like 621 666 - -
Vvi18g1768 740 ProSiteProfiles Zinc finger PHD-type profile. 619 669 IPR019787 -
Vvi18g1768 740 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 690 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1768 - - - vvi:100246638 1516.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1768 . Blo12g00808 . Bda03g00366 . Bpe04g00328 Bma04g00343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14301 PF00628 PHD 1.10E-10 CL0390 Vvi TR