Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1770 ATGGATGCGTCCTCGTCTCAGCCGTTAACGTTCTATGACTTTCTGGACAGAATGCGGAATCCAGCTTCTCTCGATCTGGTTCGGTCCATCAAAAGTTTTATTGTATCTTTTTCATTCTATGCGCCCAGCCCAGAAAATGATGGCAAGAGGCTGCAAGACTTCCTTTTAACAATGGAAGATTCTATAAGGGACCATCCGTTATGGGTTGGGGCAACTGAGGAAGAAATAGACTCTGCAATTGAGGGTTTGGAGAAGTATGTTATGACAAAATTGTTCTCTCGCACATTTGCGGCTTCTCCTGAGGATGCTAAGGCTGACCAGGAAATTTCAGAAAAAATAAGCTTGCTACAAAACTTCTTGAGGCCTGAGCATTTGGATATACCTGCAGTACTTCAGAATGAAGCTTCATGGCTGCTTGCAGAGAAAGAATTGCAGAAAGTCAATGCTTTCAAGGCTCCTCGGGAGAAGCTTCTTTGCATTTTGAATTGCTGCAGGGTCATAAACAATTTGCTGCTTAACGCAGCAATGTCAGAAAATCATATTCTAGCTGGAGCTGATGATTTTCTTCCTGTTCTAATATATGTCACGATCAAGGCAAGCTCTCATTGGCGAATCCTCCTCAGCTGCATTCAAACCTCAAATTCATCCAGCTGTATCGGAGGCAGGAGAAGCTTGTGTCAGAAGTGGCTTATTATTTCACAAATCTGGTCTCTGCCAAGTCATTTATTGTTGACCTAG 738 43.09 MDASSSQPLTFYDFLDRMRNPASLDLVRSIKSFIVSFSFYAPSPENDGKRLQDFLLTMEDSIRDHPLWVGATEEEIDSAIEGLEKYVMTKLFSRTFAASPEDAKADQEISEKISLLQNFLRPEHLDIPAVLQNEASWLLAEKELQKVNAFKAPREKLLCILNCCRVINNLLLNAAMSENHILAGADDFLPVLIYVTIKASSHWRILLSCIQTSNSSSCIGGRRSLCQKWLIISQIWSLPSHLLLT* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28940631 28948447 - Vvi18g1770 Vvi18g1770 781473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1770 245 Pfam Domain of unknown function (DUF5601) 28 92 IPR041545 -
Vvi18g1770 245 ProSiteProfiles VPS9 domain profile. 103 245 IPR003123 -
Vvi18g1770 245 Pfam Vacuolar sorting protein 9 (VPS9) domain 139 201 IPR003123 -
Vvi18g1770 245 Gene3D VPS9 domain 100 224 IPR037191 -
Vvi18g1770 245 SMART vps9_2 136 240 IPR003123 -
Vvi18g1770 245 PANTHER OS03G0842700 PROTEIN 1 202 - -
Vvi18g1770 245 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 202 IPR045046 GO:0005085|GO:0016192
Vvi18g1770 245 Gene3D - 18 98 - -
Vvi18g1770 245 SUPERFAMILY VPS9 domain 9 200 IPR037191 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1770 K20131 RABGEF1; Rab5 GDP/GTP exchange factor - vvi:100251775 394.045
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1770 Blo01g01693 . . . Bpe02g00249 . . Bma01g02458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00913 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017228 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6