Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1771 ATGGCGCACCAGCTGATCATGGGTGCTGCAAATCAGTACCAGACATGGCGGATTCCGGCCACCAGGGTAGCACACAACGGCCAAGCGCAGTGGCCGGACGACGATCACCATCGACTGACACGGCCCATCGACGAACCAATGAAGAATTGGGACACAAAACTTCAGCATTACTTCCATCTTCACCAGCCTGATAGGTGGTACAGGACACTGCCCCCATCTGAGATGCTTCCCAGAAATGAGGCCCTGGGGGGCTACATCTTTGTGTGCAACAATGACACCATGCAAGAGGATCTTCGCCGCCAGCTCTTTGGGCTGCCACAGAAGTATAAGGACTCAGTTAGGGCAATAACCCCAGGCCTACCACTTTTCCTCTATAACTACACAGCCCATCAGTTGCATGGGGTATACCAGGCCATGAGCTTTGGGGGCTCAAATATAGACCCAACAGCATGGGAAGACAAGAAGTGCAGAGGAGAATCCAGATTTCCAGCCCAGGTTAGAATTCGAACCAAGAAGAAATGCAAACCACTAGACGAGGATGCATTTAGGCCCATTTTGTACCACTATGATGGCCCCAAGTTCAGATTGCAGCTCTCTGTGCCTGAGGCACTTGCATTACTGGACTTGTTCGAAGAGGAGGACCCATGA 648 51.85 MAHQLIMGAANQYQTWRIPATRVAHNGQAQWPDDDHHRLTRPIDEPMKNWDTKLQHYFHLHQPDRWYRTLPPSEMLPRNEALGGYIFVCNNDTMQEDLRRQLFGLPQKYKDSVRAITPGLPLFLYNYTAHQLHGVYQAMSFGGSNIDPTAWEDKKCRGESRFPAQVRIRTKKKCKPLDEDAFRPILYHYDGPKFRLQLSVPEALALLDLFEEEDP* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28949935 28951701 - Vvi18g1771 Vvi18g1771 781474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1771 215 PANTHER B2 PROTEIN-LIKE 4 214 - -
Vvi18g1771 215 SMART dcd 80 212 IPR013989 -
Vvi18g1771 215 Pfam Development and cell death domain 83 210 IPR013989 -
Vvi18g1771 215 PANTHER - 4 214 IPR044832 GO:0034976
Vvi18g1771 215 ProSiteProfiles DCD domain profile. 80 212 IPR013989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1771 - - - vvi:100256906 436.417
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013862 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 2 1 25