Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1774 ATGTTTTGCATTATCGTGGCTGATGAAAAACTGAAAATTTTGGTTTTTGAGAAAGTGAAGAAAAGGATGAGAATCGATTTTTTTCCCCAATATTTTTGTGTTATTTTTGTTTATAAGAAAGTGAATATTATTTTGGTTGATAATAGAGTGGGAACATTTTGTTTGATTGTGGGAAAACTGAAGTTTATTATTGAAGTCCATTCTTTCTATGTTGCAGGTTGTGCATGTCTTTTGGAGCTACTAGCCGAACCCCTGCATATTTTTTTCAAGAACTTGCATTTCCTTAAGCTGCGGTTAATTGTCGAAACTGCAGCAACATTTTTTCGTTGTCTAACTACCTATATTTTGATTGTCAAGCAAACTGGCATGGAGAAAGGGATCGTTTTAGCCATTTCACAAGTTGCTTATGGAGCTTGCTTGTTCTTCGGTTATTTGGGCTATTTCTTTTATTGCCAATTTAAAAATTCTGGTCTTTTCCCCTTAAGAGTAGGAAGCATGATGGACTATGATGGGAAGCTCTTAGTAATGTGTATGTGGTTCTCCTTTCTAAAGTGCATTTTTCAAAGAGGAGAAAAGATGGTCCTTCTATGGTTTTTAACACCACATAGCAAAGCAGCATATGGGTTTGTAGACAGATTAGGCAACTTGGTGGTGAGGTTGGTGTTTTCTCCTTTTGAAGAAATTTCATATGCTACTTTTGCAAGAGGTGCATCAGACCCACAAAAGGGCATATGGTTGGGAAGCTCCCTCACAGAGGCTTTGAAGCTTGTTTTGTTAGTTGGTTTTGTGGTCATGACATTTGGTCCAAGCTACTCTTACTCGCTCATCAGAATGTATGATCGGAGATGGATTGATGGAGAAGCTCCTAAAGCCCTCCAATACTATTGCCTTTATGTCTTTCTTTTGGCTGTGAATGGAACAGTTGAAGCATTTATGTATTCTGTTGCAACTGAAGAACAACTCCAGCGTGCAAATGTCTTATCATTTATATTCTCTATGATTTACCTTGGTCAGAATACACTACTGAGACAATCTGCTGGTGCGGTTGGTTTGGTGGTTGCAAATTCTTTAACTATAACCTTGAGGATTGCATACTCGATCAACTTCATTAATCGTTATTTCCAGGGTTCTCCCTTGTTTTCTTTTCTGAGCTGCTTGCCATCAGGTTGGACATATCTGTTGTTGTCGGGTGTGATAACTCGAATTTCTGAGAGAAAATTTCTGGACCCAGAAAACTTCCGGCAAACATTCTTCATTCATTTCTCTATTGGATTGACCTGCTTCTGCATGTCTTCCGTTGTCATCTATCGCCGAGAGAGGCCTCTCATCAACAAAATTATCGGTTTTCATGACCACTCAGACTAA 1365 38.53 MFCIIVADEKLKILVFEKVKKRMRIDFFPQYFCVIFVYKKVNIILVDNRVGTFCLIVGKLKFIIEVHSFYVAGCACLLELLAEPLHIFFKNLHFLKLRLIVETAATFFRCLTTYILIVKQTGMEKGIVLAISQVAYGACLFFGYLGYFFYCQFKNSGLFPLRVGSMMDYDGKLLVMCMWFSFLKCIFQRGEKMVLLWFLTPHSKAAYGFVDRLGNLVVRLVFSPFEEISYATFARGASDPQKGIWLGSSLTEALKLVLLVGFVVMTFGPSYSYSLIRMYDRRWIDGEAPKALQYYCLYVFLLAVNGTVEAFMYSVATEEQLQRANVLSFIFSMIYLGQNTLLRQSAGAVGLVVANSLTITLRIAYSINFINRYFQGSPLFSFLSCLPSGWTYLLLSGVITRISERKFLDPENFRQTFFIHFSIGLTCFCMSSVVIYRRERPLINKIIGFHDHSD* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 28991562 29014023 + Vvi18g1774 Vvi18g1774 781477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1774 454 Pfam Rft protein 67 447 IPR007594 GO:0006488|GO:0016021
Vvi18g1774 454 PANTHER ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED 69 452 IPR007594 GO:0006488|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1774 K06316 RFT1; oligosaccharide translocation protein RFT1 - vvi:100243141 740.339
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .