Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1776 ATGCTGCTCATATGGCCATGGATCGAAGAAGGAATTAGTAAAACACCAGCATTCTCGCTTGCAGAGTCGAACTGCAGTTACCAATGTGGGAAAGTAATGATTCCTTACCCATTTGGAATTGGAAATGCTGAATGTGCTAAGGACAAGAATTTCCTTCTCAAGTGCAACAATGGTCAGCCATTTTTGCTTCAAAACATTCCTGTTCTTGGTATATCACTGGCACAAGGCACAGTTACTGTTAGCCTTCAAAGTGCATCTGAACGCAATAAGAAGCATACTCTGACTGATAAAATATTCTATGGTGGATTCAACCTGGAAGGCAGCCCATTTATGTTGTCCAACTCAAACAAGTTCATAGTAGACCTTGATTGGGTGGTGGGAGAAAAGACTTGCAAGGAAGCTCAAGCCAACTGCGGCAAGAACACTGTTTGCTCAGACTCTACCAATGGCCCTGGATATCGCTGCTTCTGCAAACCGGGATTCTCGGGAAATCCCTATCGTCCTAATGGTTGCGAAGACATTGATGAGTGCAGCGAACCAAATATATACCAGTGTGAAGGTATTTGCCGGAATACAGTTGGGAACTACAGTTGCCGCTGCCCATTTGGAATGCATGGTGAAGGGAAAGTGGCTTGCAGAGGACACCATACTGCTACTGTATTCTTAGGCATAGGCTTAAGCCTTGGATTCTTATTGGCACTTTCCGGGCTTTTTCGATTGTATTTACTGGTTCATGAACAGAACAGCATCAAACTGAAAAGGAAATTTTTCAAGAGAAATGGTGGCTTATTGCTGGAGCAACAGATCTCTTCAGACAAAGGGAAACTCGAAAAAATAAAAAATTTCACTTCGGAGGAGTTGGAGAAGGCCACAGATCACTACAATGACAACCGAATCCTTGGGCAAGGAGGCCAAGGTATTGTTTACAAAGCAATGTTACCGGATGGAAACCTTGTAGCTGTGAAGAAGTCCGAAATGATGGATGAAGGTCAAATTGAACACTTCGTCAACGAGGTCGTAATACTTTCGCAGATCAACCACAGACATGTTGTGAAACTGTTAGGTTGCTGTTTAGAAACTGAGGTTCCTCTACTAGTATATGAGTATGTCTCCAATGGAACCCTTTCCGACCACATCCATGCTCAGCTGGAGGAGGCTCCAATGAAATGGGCAGATCGAACGAGAATTGCTACTCTGGCAGGCAGCCCATTCACGTTCTTCCACAATCGTAACAAATTTGTAGTTCTTGGCTGCAATATAACTGCTTTGATTGATAACAACCGGGAGTATCGGAGGGCGTGTTTATCTTTCTGCCGGGGATACCCTCCCTCTGCCGCACCAGGGTTTTGCACCACCTCCCTCCCGAAGCAACTCAAGACTTTGAATATCACACTCTTCAGCATCGACCCCTCCTCGGATTCCAATCATAAATTTTGCCTACACGCTTTTGTGGCCGCCAAATCTACTTATAGTATTTCGGAAATAAATCTCTCCAAGCATCCTGTAACTACACAAGTGACACTTCAATGGGTTGTAGGAGAAGAAAAGTGCGAAGCCTCTGGAAACAGATCAGAAACATATGCATGTGGCAAAAACACTGAGTGTCAGAGCTCCACCAATGGCCCCGGATATCGATGCATATGCAAACAAGGCTTTCAGGGAAACCCCTATCTTCCCGGAGGTTGCCAAGATATTGACGAGTGTGACGATCCAAGTGGATATCCGTGTGACGGATTCTGCCAGAATACAGCTGGAGATTACACTTGTAGAAGGTCTGATGAAAGTGAAGTGAATAGCCGAAGACATGGCGTTGCCATTTTGGCATCAGCTATAATCTTAAGCATTGGATTCTTGTTGTTAATTGCTGGAATTTACTGGTTGAATGCGCTCGTGAAGAAAAGGAAGATCATTAAACTCAAGAAAAAGTTATTTAAGCGCAATGGAGGTTTGTTATTACAGCAACAAATCTCCTCAGACAAAGGCAAACTTGAGAAACTAAAAATTTTCTCCTCCGAGGAGTTAGAGAAGGCAACTGATTACTATAATGAGAACCGCATCCTTGGGAAAGGAGGCCAAGTTATAGTTTATAAAGGAATGTTACCCGATGGAAGCGTTGTAGCCGTTAAGAAGTCTAAAAAGATGGATAAAGCTCAAATTGAACGCTTCGCAAATGAGGTGGTCATACTTTCCCAGATCAATCACAGAAATGTGGTTAAACTGTTAGGTTGTTGTTTAGAAACTGAGGTTCCACTGCTGGTGTATGAGTTTGTCTCAAACGGAACCCTTTCTAACCATATCCATGATCAGATGGAGGAGTCTCCAATGAAATTGTCGGATCGGTTAAGACCAATTTCTGGTCTTAGATCTGAAGATATGGGATTAGCTGCACATTTCATATGCTCAGCAAAGAAAAATCGTCTCTTCGATGTGTTGGATCCGCAAGTTGTGATGGAGGGAGAAAAAGAGGAGCTAGTAATCTTGGCCAACCTCGCAATGAGGTGCTTGAAGTTGAGTGGAAGTAAAAGGCCAACCATGAAAGAAGTTTCTTGGGAGCTGGAAAATCTGAAAAAGCTTCAAAAGCATTTGCCTGTTGAACTAGACCATCAAGAGGACGATTACTACTTTGCGGAATCGTCAAGAAGTTTGGAGCCCGGAGATGAATTGGAACTAGACATGCATCCAAGATCGACTGAATAG 2697 43.46 MLLIWPWIEEGISKTPAFSLAESNCSYQCGKVMIPYPFGIGNAECAKDKNFLLKCNNGQPFLLQNIPVLGISLAQGTVTVSLQSASERNKKHTLTDKIFYGGFNLEGSPFMLSNSNKFIVDLDWVVGEKTCKEAQANCGKNTVCSDSTNGPGYRCFCKPGFSGNPYRPNGCEDIDECSEPNIYQCEGICRNTVGNYSCRCPFGMHGEGKVACRGHHTATVFLGIGLSLGFLLALSGLFRLYLLVHEQNSIKLKRKFFKRNGGLLLEQQISSDKGKLEKIKNFTSEELEKATDHYNDNRILGQGGQGIVYKAMLPDGNLVAVKKSEMMDEGQIEHFVNEVVILSQINHRHVVKLLGCCLETEVPLLVYEYVSNGTLSDHIHAQLEEAPMKWADRTRIATLAGSPFTFFHNRNKFVVLGCNITALIDNNREYRRACLSFCRGYPPSAAPGFCTTSLPKQLKTLNITLFSIDPSSDSNHKFCLHAFVAAKSTYSISEINLSKHPVTTQVTLQWVVGEEKCEASGNRSETYACGKNTECQSSTNGPGYRCICKQGFQGNPYLPGGCQDIDECDDPSGYPCDGFCQNTAGDYTCRRSDESEVNSRRHGVAILASAIILSIGFLLLIAGIYWLNALVKKRKIIKLKKKLFKRNGGLLLQQQISSDKGKLEKLKIFSSEELEKATDYYNENRILGKGGQVIVYKGMLPDGSVVAVKKSKKMDKAQIERFANEVVILSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSNHIHDQMEESPMKLSDRLRPISGLRSEDMGLAAHFICSAKKNRLFDVLDPQVVMEGEKEELVILANLAMRCLKLSGSKRPTMKEVSWELENLKKLQKHLPVELDHQEDDYYFAESSRSLEPGDELELDMHPRSTE* 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 29046999 29058675 - Vvi18g1776 Vvi18g1776 781479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 790 867 - -
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 402 782 - -
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 121 399 - -
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 63 - -
Vvi18g1776 898 Pfam Calcium-binding EGF domain 173 212 IPR001881 GO:0005509
Vvi18g1776 898 Pfam Calcium-binding EGF domain 564 594 IPR001881 GO:0005509
Vvi18g1776 898 CDD EGF_CA 564 589 - -
Vvi18g1776 898 Gene3D Laminin 567 601 - -
Vvi18g1776 898 Gene3D Laminin 176 212 - -
Vvi18g1776 898 MobiDBLite consensus disorder prediction 876 898 - -
Vvi18g1776 898 Pfam Wall-associated receptor kinase galacturonan-binding 25 80 IPR025287 GO:0030247
Vvi18g1776 898 ProSiteProfiles Protein kinase domain profile. 681 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1776 898 SUPERFAMILY Protein kinase-like (PK-like) 664 848 IPR011009 -
Vvi18g1776 898 ProSiteProfiles EGF-like domain profile. 173 207 IPR000742 -
Vvi18g1776 898 Gene3D Phosphorylase Kinase; domain 1 265 369 - -
Vvi18g1776 898 SUPERFAMILY Protein kinase-like (PK-like) 280 398 IPR011009 -
Vvi18g1776 898 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 189 200 IPR000152 -
Vvi18g1776 898 Gene3D Phosphorylase Kinase; domain 1 655 756 - -
Vvi18g1776 898 ProSiteProfiles Protein kinase domain profile. 294 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1776 898 ProSitePatterns Calcium-binding EGF-like domain signature. 173 198 IPR018097 GO:0005509
Vvi18g1776 898 SUPERFAMILY EGF/Laminin 173 207 - -
Vvi18g1776 898 SUPERFAMILY Growth factor receptor domain 131 582 IPR009030 -
Vvi18g1776 898 Gene3D Transferase(Phosphotransferase) domain 1 777 878 - -
Vvi18g1776 898 SMART egfca_6 564 604 IPR001881 GO:0005509
Vvi18g1776 898 SMART egfca_6 173 213 IPR001881 GO:0005509
Vvi18g1776 898 ProSitePatterns Calcium-binding EGF-like domain signature. 564 589 IPR018097 GO:0005509
Vvi18g1776 898 Gene3D Laminin 515 566 - -
Vvi18g1776 898 Gene3D Laminin 128 175 - -
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 790 867 IPR045274 GO:0007166
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 402 782 IPR045274 GO:0007166
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 121 399 IPR045274 GO:0007166
Vvi18g1776 898 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 63 IPR045274 GO:0007166
Vvi18g1776 898 CDD EGF_CA 173 206 - -
Vvi18g1776 898 ProSiteProfiles EGF-like domain profile. 127 172 IPR000742 -
Vvi18g1776 898 SMART egf_5 176 213 IPR000742 -
Vvi18g1776 898 SMART egf_5 130 172 IPR000742 -
Vvi18g1776 898 SMART egf_5 516 563 IPR000742 -
Vvi18g1776 898 Pfam Protein tyrosine and serine/threonine kinase 684 778 IPR001245 GO:0004672|GO:0006468
Vvi18g1776 898 Pfam Protein tyrosine and serine/threonine kinase 298 398 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1776 - - - vvi:100241421 747.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76367 PF07714 PK_Tyr_Ser-Thr 7.70E-14 CL0016 Vvi PK