Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1780 ATGAGTCTAAACCAGGTTCTGGTGGATTTGGAGTCTGAAACTGCATGGGTTGAAGGGGGTGCAACACTTGGTGAGACTTACTATGCTGTTGCAGAAGCGAGCAATGTACATGGGTTCTCAGCCGGGTCATGCCCAACTGTAGGTGTTGGTGGCCACATTTCTGGCGGTGGATTTGGGTTGTTGTCCAGAAAATATGGTCTTGCAGCTGACAATGTGGTGGATGCGCTTCTCATTGATGCAGATGGACGCCTAGCCAAATCAGACTATGTGAGGACTCCCATTTCCATGAAAGGCCTGAGGACTGCCTTGGACACTCTTGAGAAGGAGCCAAAAGGTTACGTTATCTTGGACCCTTATGGAGGAGAAATGGAGAGAATAGGCAGTGATGCCATAGCTTTTCCTCACAGAAAAGGCAACCTGTTCGCAATTCAGTATATGGTGGCCTGGGAAGAAGACTCTCTTATGAGCTACAAGTACATAGATTGGATAAGAGGATTCTACAAGTCGATGACGCCGCATGTTTCATGGGGTCCAAGGGCTGCTTATGTTAATTACATGGACCTGGATCTTGGAGTGATGGAAATGGTGAATAGCAGCTTTTCATCTGGTGATCCTGTGGAGATTGCCAGGGCTTGGGGTGAGAAGTATTTCTTGAACAACTACGAGAGTGTTTTCGATAATTTAATGCTATACATAGGCTGGCCATGTGCATTCATCTCTCCATGCTTTTGTCCTCAACTCCTGATACTATATGTTATCAACCTCGGTGTTAAAAGCCACCTACTCTCTATAGTCTCCACCTCCATCTCAATTCGAAGAAGCATAGCCATGGTGAAGTACCTAGGGAACCCGCATTCCCTTTTCATAATAACCTTCATAGCTTTTGTTGTCCCTTGCTTTTGTGATCCCACTGACATCATTTCGTCTTGCTTAATCCGGCACAATGTTTATAACTTCACGTTATTGCCTCACAACGGAAGCCAGTCTCCAGATTACTATAGGCTCCTCAACTTTTCCCTTCAGAATCTGCGGTATGCTGTCCCCACTGCTCCAAAACCAGTTGCTATTGCTATACCACAGAGTCTAAAGCAACTAGTGAACAGTATGCGGTGTTGTAGGGAAGGATGGTATGAGTTTAGAGTAAGGTGCGGTGGACACAGCTATGAAGGGATTTCTTCGGTTGTTCCGGATGGAAATCCATTTGTTATCATTGATATGATGAGTCTAAACCAGGTTTCGGTTGATGTGGAGTCTGAAACAGCATGGGTTGAAGGGGGAGCAACACTTGGTGAGACGTACTATGCAGTTGCAGAGGCGAGCAATGTGCATGGATTCTCAGCCGGGTCATGCCCAACTGTTGGTGTTGGCGGCCACATTGCGGGGGGTGGATTCGGGCTGTTGTCGAGAAAATATGGTCTTGCAGCTGACAATGTGGTGGATGCGCTTCTCATTGATGCAGACGGACGCGTACTAGACCGGAAAGCCATGGGAGAAGATGTGTTCTGGGCGATTCGAGGAGGAGGGGGCGGTGATTGGGGGATTGTCTATGCATGGAAGATCAAGTTGTTGAAAGTACCTGAAACTGTAACATCCTTTGATGAAGAAACTGGGGTATCAGCTTCATTCAAAGGGTTCTATCTGGGTTCAAGGAACGAAGCCATGTCAATCCTGAACCGGGTTTTCCCAGAGCTGGGAGTTGAGAAAGAAGATTGCAGAGAAATGAGTTGGATTGAATCCATCCTCTACTTCAGTGGCTTGCCTAATGGAAGCTCCATCTCTGAGCTGAGAAACCGATACCTGGAAGACAAACTATACTTCAAGGCTAAATCAGACTACGTGAGGACCCCAATTTCCATGGAAGGCCTGGTGACGGCCTTGGACATTCTTGAGATGGAGCCGAAAGGGTCCGTTGTCTTGGACCCATATGGAGGAGAAATGGAGAAGATAAGCAGTGATGCCCTACCTTTTCCTCACAGAAAAGGCAACCTGTTCTCAATTCAGTATATGGTGGCCTGGGAAGAAGACAGCACTGCTATGAGCAACAAGTACATAGATTGGATAAGAGGATTCTACAAGTGGATGATGCCGTATGTTTCACAGGGTCCAAGGGCTGCTTATGTTAACTACATGGACCTTGATTTAGGACAGATGAATAGCAGCATTTCATCTAATGATCCTGTGGAGGCTGCCAGGGATTGGGGTGAGAAGTATTTCTTGAACAACTATGATAGGTTGGTGAAAGTGAAGACATGCATTGATCCGGACAATGTGTTCAATAATCAACAGGGCATTCCTCCAATGCCCACAGCCAGGTTAAATAATAGAAGTGAGGGGCTCGGAGTAAGCGAAAGATGCATGGTTGTAAGTTACTGA 2373 46.57 MSLNQVLVDLESETAWVEGGATLGETYYAVAEASNVHGFSAGSCPTVGVGGHISGGGFGLLSRKYGLAADNVVDALLIDADGRLAKSDYVRTPISMKGLRTALDTLEKEPKGYVILDPYGGEMERIGSDAIAFPHRKGNLFAIQYMVAWEEDSLMSYKYIDWIRGFYKSMTPHVSWGPRAAYVNYMDLDLGVMEMVNSSFSSGDPVEIARAWGEKYFLNNYESVFDNLMLYIGWPCAFISPCFCPQLLILYVINLGVKSHLLSIVSTSISIRRSIAMVKYLGNPHSLFIITFIAFVVPCFCDPTDIISSCLIRHNVYNFTLLPHNGSQSPDYYRLLNFSLQNLRYAVPTAPKPVAIAIPQSLKQLVNSMRCCREGWYEFRVRCGGHSYEGISSVVPDGNPFVIIDMMSLNQVSVDVESETAWVEGGATLGETYYAVAEASNVHGFSAGSCPTVGVGGHIAGGGFGLLSRKYGLAADNVVDALLIDADGRVLDRKAMGEDVFWAIRGGGGGDWGIVYAWKIKLLKVPETVTSFDEETGVSASFKGFYLGSRNEAMSILNRVFPELGVEKEDCREMSWIESILYFSGLPNGSSISELRNRYLEDKLYFKAKSDYVRTPISMEGLVTALDILEMEPKGSVVLDPYGGEMEKISSDALPFPHRKGNLFSIQYMVAWEEDSTAMSNKYIDWIRGFYKWMMPYVSQGPRAAYVNYMDLDLGQMNSSISSNDPVEAARDWGEKYFLNNYDRLVKVKTCIDPDNVFNNQQGIPPMPTARLNNRSEGLGVSERCMVVSY* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 29086518 29097009 + Vvi18g1780 Vvi18g1780 781483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1780 790 Pfam FAD binding domain 354 491 IPR006094 GO:0050660
Vvi18g1780 790 Pfam FAD binding domain 3 85 IPR006094 GO:0050660
Vvi18g1780 790 PANTHER OS08G0158400 PROTEIN 85 223 - -
Vvi18g1780 790 PANTHER OS08G0158400 PROTEIN 1 84 - -
Vvi18g1780 790 PANTHER OS08G0158400 PROTEIN 292 532 - -
Vvi18g1780 790 PANTHER OS08G0158400 PROTEIN 534 775 - -
Vvi18g1780 790 Gene3D - 406 521 IPR016169 -
Vvi18g1780 790 ProSiteProfiles PCMH-type FAD-binding domain profile. 1 119 IPR016166 GO:0071949
Vvi18g1780 790 Gene3D - 144 228 IPR016169 -
Vvi18g1780 790 Gene3D - 1 93 IPR016169 -
Vvi18g1780 790 Pfam Berberine and berberine like 705 765 IPR012951 GO:0016491|GO:0050660
Vvi18g1780 790 Pfam Berberine and berberine like 181 222 IPR012951 GO:0016491|GO:0050660
Vvi18g1780 790 Gene3D - 522 717 - -
Vvi18g1780 790 SUPERFAMILY FAD-binding/transporter-associated domain-like 3 87 IPR036318 GO:0050660
Vvi18g1780 790 ProSiteProfiles PCMH-type FAD-binding domain profile. 349 525 IPR016166 GO:0071949
Vvi18g1780 790 SUPERFAMILY FAD-binding/transporter-associated domain-like 337 526 IPR036318 GO:0050660
Vvi18g1780 790 Gene3D - 306 405 IPR016167 -
Vvi18g1780 790 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 85 223 - -
Vvi18g1780 790 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 534 775 - -
Vvi18g1780 790 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 1 84 - -
Vvi18g1780 790 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 292 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1780 - - - vvi:100267089 1016.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1780 . Blo12g00807 . Bda03g00367 . Bpe04g00329 Bma04g00344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016642 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7