Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1783 ATGACAAAACCCAATCCCCAAGAAGCTTCAACGGCGATCATCGAGATTTTTGGAGTGAAGATTCACAGGAACCCTCCTCAGGCCACACTCACCGATCTGGGTGTCACTTCTTGGAAAAAGTGGGGATGCTCTCCAAGCAAATTCCCATGGACATTTGAAGCTAAAGAGACAATGTATCTGCTGGAGGGAAAAGTGAAGGTTTACTGTGATGGGCATGATGGATTCTTTGAAATTGGAGCGGGTGATTTGGTTGAGTTCCCCAAAGGAATGAAAGTCACTTGGGATGTCACTGAAGCTCTGAACAAGCACTACTCCTTGGAGAATGATTCTTTAATCCTTTCACTGATTAATTAG 354 44.35 MTKPNPQEASTAIIEIFGVKIHRNPPQATLTDLGVTSWKKWGCSPSKFPWTFEAKETMYLLEGKVKVYCDGHDGFFEIGAGDLVEFPKGMKVTWDVTEALNKHYSLENDSLILSLIN* 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 29107955 29111539 + Vvi18g1783 Vvi18g1783 781486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1783 117 CDD cupin_TM1112-like 37 106 - -
Vvi18g1783 117 Pfam EutQ-like cupin domain 31 104 IPR008579 -
Vvi18g1783 117 Gene3D Jelly Rolls 9 106 IPR014710 -
Vvi18g1783 117 PANTHER RMLC-LIKE JELLY ROLL PROTEIN-RELATED 6 107 - -
Vvi18g1783 117 SUPERFAMILY RmlC-like cupins 23 104 IPR011051 -
Vvi18g1783 117 PANTHER OS04G0445200 PROTEIN 6 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1783 K06995 K06995; uncharacterized protein - vvi:100256915 231.491
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1783 . . . . . . . Bma01g02473 . . . Cma09g01208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00190 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016537 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 2 0 1 7