Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1785 ATGGATCTCCTCTTCTCTAATCGTCACTTTCCATCCAATTTCTCACCTGCCGTTCCCACTGATAGTTCCAATTCCAAGGGAAGTGGCGGGAGTTATCAGGCGGTTAATCTTTGCCCTAATTGCAAAACCGCTTACTATTTCAGGCCCTACAAGATTGCCCCACTTCAGGGGAGTTTCGTGGAGATTGGTAGCAAAAACGGTGGTGGTCATGAGGAAGACTATGGGAGCAGGCTCAGGATGTCGTTTTGGGAGACTTTGAGGTCCTATGGAGGCGACCCGCCGGAGAATTGGCCACCTCCGCCGCCTCCGCCGTCGGGAAATGGGCTGGCAAGGAATGGGTGGGGTGGGTCGAATTTAGGGAAGGATTTGCCGACGCCGAAGGAGATCTGCAAGGGACTTGACAAGTTTGTCATTGGGCAGGAAAGAGCCAAAAAGTTAGATTTCATTCCATTTTCGGACTTTTTGGTGCGTTCAAACTGGTGTCAGACATGGGAGGTGCTATCTGTGGCTGTATATAATCACTACAAAAGGATATATCACGGCTCCTTGCAGAAAGGGTCAGGAGCAGAATCAGGTACATCAGAGGTTGATGATGATTCTGTGGAGCTGGAAAAGAGCAATGTTCTCTTGATGGGTCCAACTGGCTCAGGAAAAACATTACTTGCAAAAACACTTGCTCGTTTTGTGAATGTGCCCTTTGTCATTGCTGATGCAACAACCCTTACACAGGCTGGTTATGTTGGAGAAGATGTTGAGTCAATATTATATAAATTGCTTACGGTTGCTGAGTTCAATGTACAAGCAGCTCAACAAGGGATGGTCTATATCGATGAAGTTGACAAGATAACTAAAAAGGCTGAGAGCTTAAACCTTAGCAGAGATGTTTCTGGTGAGGGTGTTCAGCAAGCATTACTGAAAATGCTGGAAGGAACTATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTAGAAAAAACCATTTCAGATAGACGGCAAGATTCTTCAATTGGTTTTGGAGCACCTGTTCGTGCTAACATGAGAACTGGTGGGTTAACCAATGCTGTGGTGACATCATCCTTACTAGAATCGGTTGAAAGTAGTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGCTTTCCTATTCTAGTTAGTTTGTCAGCTCTGACTGAGGATCAACTTGTTAAGGTTCTCACAGAACCAAAAAATGCTCTTGGTAAGCAGTACAAGAAATTGTTTAGCATGAACAATGTAAAGCTACATTTTACAGAGAAAGCACTCAGACAGATCGCAAAGAAGGCAATGGTCAAGAATACGGGTGCTAGGGGTTTAAGAGCCCTACTAGAGAGCATTCTAACTGAAGCCATGTATGAGATTCCTGATGTTAAGACAGGAAAGGATAGAGTAGATGCTGTTGTGGTTGATGAGGAGTCAGTGGGTTCAGTAAATGCCCCTGGATGTGGAGGGAAAATCCTTCGTGGAGACGGTGCATTGGATTGTTACCTTGCTGAAACCAAGTTGAAAGATCCAGTGGAGAGTGGTGGCGAGGCAGGGGATGGGGAATTGCAGGAAGCCGAGTCGGAGGTCTCATCAAGAGCCATGAGCATGTAA 1689 45.23 MDLLFSNRHFPSNFSPAVPTDSSNSKGSGGSYQAVNLCPNCKTAYYFRPYKIAPLQGSFVEIGSKNGGGHEEDYGSRLRMSFWETLRSYGGDPPENWPPPPPPPSGNGLARNGWGGSNLGKDLPTPKEICKGLDKFVIGQERAKKLDFIPFSDFLVRSNWCQTWEVLSVAVYNHYKRIYHGSLQKGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVAEFNVQAAQQGMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTGGLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAMVKNTGARGLRALLESILTEAMYEIPDVKTGKDRVDAVVVDEESVGSVNAPGCGGKILRGDGALDCYLAETKLKDPVESGGEAGDGELQEAESEVSSRAMSM* 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 29118291 29129881 - Vvi18g1785 Vvi18g1785 781488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1785 562 MobiDBLite consensus disorder prediction 93 107 - -
Vvi18g1785 562 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 24 562 - -
Vvi18g1785 562 Gene3D - 117 413 IPR027417 -
Vvi18g1785 562 CDD AAA 205 316 - -
Vvi18g1785 562 MobiDBLite consensus disorder prediction 91 117 - -
Vvi18g1785 562 SMART AAA_5 204 366 IPR003593 -
Vvi18g1785 562 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 24 562 - -
Vvi18g1785 562 Pfam AAA domain (Cdc48 subfamily) 204 408 IPR003959 GO:0005524|GO:0016887
Vvi18g1785 562 MobiDBLite consensus disorder prediction 536 562 - -
Vvi18g1785 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 501 IPR027417 -
Vvi18g1785 562 Gene3D - 414 514 - -
Vvi18g1785 562 SMART ClpB_D2_small_2 415 508 IPR019489 -
Vvi18g1785 562 Pfam C-terminal, D2-small domain, of ClpB protein 415 485 IPR019489 -
Vvi18g1785 562 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 121 506 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1785 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - vvi:100249902 996.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1785 . . . . . . . . . . Cma01g00888 Cma09g01207 Car01g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00934 . . . . Car09g01068 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75