Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1789 ATGGGGAGGAGGAGACCAGAAGAATATGAGCTGAATGAGGTGGAAGATACCATCACAGGCTCTGTTGGGAGCAGAATGCGTCTGGTTTCCAGCGAGCTTGGACTCAGGAAGACTGCTTCCACCCTCTGCGCTCGTGGAGGCTTTGTCATCGATCCTAGATCAAGGTTCGTACTCGATCGATATCTTCTCTTCTTGCTCTACACTTTTATGCAATTCTGCAACTGTTGGCAGCAGATCATTTTCTTATGGTCCATATTCTCATCCTTCTTCACACCCTTGGAGTTTTGCTTCTTCAGAGGCCTGCCAGACCATCTAGTCAGTCTTGAAAGCGCACAGATCATCTTCCTAGTTGATGTGGTCCTCCAGTTCTTCGTCGCCTACAAAGACCTTCATTCCTACAACATGGTGTATAACAGAAAAAGCATTGCCATACGCTATGCAAAGGGCAGTTTCTTGGTGGATTTTCTGGGGTGTGTGCCATGGGATGCCATCTACAAGGCCTCAGGGAGAAGGGAAGTGATGAGATATATGATTTGGATCAGACTGTATCGAGCAAGAAAGGTGGCACAGTTCTTCAAGAGAATGGAGAAGGATGTGAGGATCAATTACCTGTTCACTAGGATAGTGAAGCTGATAACAGTGGAGCTGTACTGCACACACACGGCTGCCTGCATCTTCTACTACTTGGCCACCACATTGCCACCTGCAGAAGAGGGGTATACATGGATTGGAAGCTTAACTATGGGAGATTACAAGTATATCAATTTCAGAGAGATTGATTTTTGGACCAGATATATCACTTCACTCTACTTTGCAATTGTCACCATGGCCACAGTTGGTTATGGGGATATTCATGCAGTTAACTTGAGGGAAATGATATTTATTATGATTTTTGTCTCTTTTGACATGATTCTTGGGGCATATTTGATTGGTAATATGACAGCTCTGACTGTCAAAGGCTCCAAGACAGAGAGATTTCGGGATAAAATGACTGATCTTATAAAATATATGAATCAGAACAAGCTCAATAAAGATATTAGGTCACAGATAAAAGATCATCTGAGTCTACAGTATGAGAATACCTATACTAAAGCTAGTGTTCTTGATGATATTCCCATAGCTCTCCGATCAAAGATTTCTGAGAATTTATATATCGAGATGGTCCAGAAAGTTCCGCTTTTCAAAGGATGTTGTGATGAGTTCTTAAAGCAGATAGTTATGAAGCTGAATGAAGAATTTTTTCTTCCTGGTGAAGTGATCCTTGAACAAAGCAGTGCTGTGGATCAAGTTTATATTGTATCTCATGGACGTCTGGAAGAGGTTGCTATTGGAGAAAATGGATCAGAAGAATTGATTGCAAATCTTGAACCCTGCAGTATATTTGGTGAAGTTGCAGTCTTATGCAATATTCCTCAGCCATATACAGTTCGTGTATGTGAATTATGCAGACTTCTAAGAATTGAAAAACAATCTTTGAATGGTATCTTGCAACTTTACTTCACAGACAGCCGCCAGATTCTGAATAATCTCCTAAAGGGTAAGGATACAGATTTGAGAATTAAACAGCTGGAATCCGATATTGCATATCTTATTACAAAGCAGTACTCTGAGCTAGCATTACGAGTAAATAGTGCAGCTTATCATGGAGACTTGTATCATTTGAAGGACTTGATCAAATCCGGAGCAGATCCTTGCAAAACTGATTATGATGGACGATGTGCACTTCACTTGGCTGCAGCAAAAGGTTATGAAGAAATTGTGAGGTTTCTCATTCAACATGGAGCCAACACTAACTGCATAGATAATTTTGGAAATTCACCTCTTTTTGAGGCTGTCAAGGCTGGGCATGATAGGACTGCTTTGCTTCTCATCGAGGATGGTGCAACCTTGAATTTGGAAGATGCTGGATGGTACCTTTGTAAGGCTGTAATGGGTAGCAACATTGATTTATTAAAGCGTTTGTTGGAGAATGGAGTTGACCCAAACTCCAGGAACTATGACCTACGAACACCACTACATTTTGCAGCAGCAGAAGGTTTGCACCTTGTGGCAAATATCTTGATCAAATTTGGAGCAGATGTTCTATCCAAAGACAGATACAGAAGAACTCCTCTTGATGAAGGCCGAGCATGTGGGAGCAAGCCTTTAATCAAAATTTTGGAGCAGGCTAAAGAGGCTTGCTTGGCAAGACACATGGTTGTTGAAAGGGCATGA 2214 41.6 MGRRRPEEYELNEVEDTITGSVGSRMRLVSSELGLRKTASTLCARGGFVIDPRSRFVLDRYLLFLLYTFMQFCNCWQQIIFLWSIFSSFFTPLEFCFFRGLPDHLVSLESAQIIFLVDVVLQFFVAYKDLHSYNMVYNRKSIAIRYAKGSFLVDFLGCVPWDAIYKASGRREVMRYMIWIRLYRARKVAQFFKRMEKDVRINYLFTRIVKLITVELYCTHTAACIFYYLATTLPPAEEGYTWIGSLTMGDYKYINFREIDFWTRYITSLYFAIVTMATVGYGDIHAVNLREMIFIMIFVSFDMILGAYLIGNMTALTVKGSKTERFRDKMTDLIKYMNQNKLNKDIRSQIKDHLSLQYENTYTKASVLDDIPIALRSKISENLYIEMVQKVPLFKGCCDEFLKQIVMKLNEEFFLPGEVILEQSSAVDQVYIVSHGRLEEVAIGENGSEELIANLEPCSIFGEVAVLCNIPQPYTVRVCELCRLLRIEKQSLNGILQLYFTDSRQILNNLLKGKDTDLRIKQLESDIAYLITKQYSELALRVNSAAYHGDLYHLKDLIKSGADPCKTDYDGRCALHLAAAKGYEEIVRFLIQHGANTNCIDNFGNSPLFEAVKAGHDRTALLLIEDGATLNLEDAGWYLCKAVMGSNIDLLKRLLENGVDPNSRNYDLRTPLHFAAAEGLHLVANILIKFGADVLSKDRYRRTPLDEGRACGSKPLIKILEQAKEACLARHMVVERA* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 29203049 29240693 + Vvi18g1789 Vvi18g1789 781492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1789 737 PANTHER POTASSIUM CHANNEL KOR2 11 726 - -
Vvi18g1789 737 Pfam Ion transport protein 75 314 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi18g1789 737 Gene3D - 537 634 IPR036770 -
Vvi18g1789 737 Pfam Ankyrin repeats (many copies) 639 679 IPR002110 GO:0005515
Vvi18g1789 737 PRINTS Ankyrin repeat signature 571 586 IPR002110 GO:0005515
Vvi18g1789 737 PRINTS Ankyrin repeat signature 650 664 IPR002110 GO:0005515
Vvi18g1789 737 ProSiteProfiles Ankyrin repeat profile. 667 699 IPR002110 GO:0005515
Vvi18g1789 737 ProSiteProfiles Ankyrin repeat region circular profile. 570 602 - -
Vvi18g1789 737 SUPERFAMILY Ankyrin repeat 541 722 IPR036770 -
Vvi18g1789 737 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Vvi18g1789 737 ProSiteProfiles cAMP/cGMP binding motif profile. 393 513 IPR000595 -
Vvi18g1789 737 ProSiteProfiles Ankyrin repeat region circular profile. 603 634 - -
Vvi18g1789 737 PRINTS EAG/ELK/ERG potassium channel family signature 217 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi18g1789 737 PRINTS EAG/ELK/ERG potassium channel family signature 265 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi18g1789 737 PRINTS EAG/ELK/ERG potassium channel family signature 309 318 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi18g1789 737 SUPERFAMILY cAMP-binding domain-like 321 511 IPR018490 -
Vvi18g1789 737 ProSiteProfiles Ankyrin repeat profile. 570 602 IPR002110 GO:0005515
Vvi18g1789 737 Pfam Ankyrin repeats (3 copies) 545 634 IPR002110 GO:0005515
Vvi18g1789 737 Gene3D - 56 318 - -
Vvi18g1789 737 Gene3D - 635 734 IPR036770 -
Vvi18g1789 737 SMART ANK_2a 634 663 IPR002110 GO:0005515
Vvi18g1789 737 SMART ANK_2a 667 696 IPR002110 GO:0005515
Vvi18g1789 737 SMART ANK_2a 537 566 IPR002110 GO:0005515
Vvi18g1789 737 SMART ANK_2a 570 599 IPR002110 GO:0005515
Vvi18g1789 737 SMART ANK_2a 603 632 IPR002110 GO:0005515
Vvi18g1789 737 Gene3D Helix hairpin bin 320 376 - -
Vvi18g1789 737 PANTHER POTASSIUM CHANNEL AKT1 11 726 IPR045319 GO:0005249|GO:0006813
Vvi18g1789 737 Pfam Cyclic nucleotide-binding domain 413 497 IPR000595 -
Vvi18g1789 737 Gene3D Jelly Rolls 377 515 IPR014710 -
Vvi18g1789 737 CDD CAP_ED 393 507 IPR000595 -
Vvi18g1789 737 SUPERFAMILY Voltage-gated potassium channels 74 317 - -
Vvi18g1789 737 ProSiteProfiles Ankyrin repeat region circular profile. 667 699 - -
Vvi18g1789 737 SMART cnmp_10 393 511 IPR000595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1789 K21867 - vvi:100256909 1427.92