Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g179 ATGGAAATGAATGAAGATATTATCATTGTGGGTGCTGGAATAGGGGGCCTGACCACATGTTTAGGACTTCACAGGTTGGGGTTGCGGAGCTTGGTTTTGGAATCATCAGACAGCTTGAGAGTTACAGGATTTGCACTCACAACATGGAAGAATGCTTGGAGGGCATTGGATGCTGTAGGCGTCGGTGATTCCATCAGACAACAGCATATGCAAATTCAGGGGCTCCAGGTTTTTTCTACAATTTCTGGACAGCCTACTTCAGAGATCTCATTCGGAGGCAAATGGGGAATCCATGAAATTCGCTGTGTAAGAAGGAAGGTGCTACTTGAAACCCTCGAGAGGGAGTTGCCTCGTGGCAGTATCAGGTATTCCTCCAAGGTGGTTTCCATCCAGGAATCAGGACACTACAAAACCGTGCACCTTGCAGATGGCTCCGTCCTGAAAACTAAGGTGTTAATCGGCTGCGATGGAGTTAATTCACTTGTAGCGAATTGGCTGGGTCTTGACAAACCGGTTGATTCCGGGCGTTCAGCCGTTAGAGGCCTTGTGGAGTTCCCAGATGGTCATGGATTGGAGCCCAAATTCCGTCAACACTTTGGAAATGGCGTTCGCCATGGGGTTATACCGTGTGGCCCCACTACCTTGTATTGGTTTCTCACTTTTGCTCCATCTGTCCACGGCGTAGACACTGAGGAAATGGATCAGAACCCAGCTAAGATGAAGGATTTTGTATTAAGTAAGCTTGGGAAAGTGCCCCAACATATAGAAAATGTGTTTGAGAAAACTGCATTGGACTGTATGTCCTGCTCTCCATTAAAGTTTAGGCTACCATGGAAAGTAGCAACAGGCCATATCTACAAGGGCAATGTTTGTGTAGCAGGCGACGCGCTTCATCCGATGACACCTGATATCGGACAAGGGGGATGCTCTGCGATGGAAGATGGCGTTGTTCTGGCGAGGTGCCTTGGAGAAGTCTTACTGAGAAAACCCACCAGGGAAGATGGAGAAGGAAAAGATGAGGAATTGGTGAGATTCTTGAGAGAAAAGTTTCTGTCGGGATTCTTGGCTAACCTCTTCTTGAGGATGGGTGATTTTGATTGCGGGCAACTCAGCATTTCTTAA 1122 47.5 MEMNEDIIIVGAGIGGLTTCLGLHRLGLRSLVLESSDSLRVTGFALTTWKNAWRALDAVGVGDSIRQQHMQIQGLQVFSTISGQPTSEISFGGKWGIHEIRCVRRKVLLETLERELPRGSIRYSSKVVSIQESGHYKTVHLADGSVLKTKVLIGCDGVNSLVANWLGLDKPVDSGRSAVRGLVEFPDGHGLEPKFRQHFGNGVRHGVIPCGPTTLYWFLTFAPSVHGVDTEEMDQNPAKMKDFVLSKLGKVPQHIENVFEKTALDCMSCSPLKFRLPWKVATGHIYKGNVCVAGDALHPMTPDIGQGGCSAMEDGVVLARCLGEVLLRKPTREDGEGKDEELVRFLREKFLSGFLANLFLRMGDFDCGQLSIS* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1761928 1765473 + Vvi18g179 Vvi18g179 779882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g179 373 Pfam FAD binding domain 6 326 IPR002938 GO:0071949
Vvi18g179 373 SUPERFAMILY FAD/NAD(P)-binding domain 6 323 IPR036188 -
Vvi18g179 373 PANTHER OS03G0153100 PROTEIN 2 334 - -
Vvi18g179 373 PANTHER OS03G0153100 PROTEIN 339 372 - -
Vvi18g179 373 Gene3D - 6 343 IPR036188 -
Vvi18g179 373 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 - -
Vvi18g179 373 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 - -
Vvi18g179 373 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 - -
Vvi18g179 373 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 - -
Vvi18g179 373 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 2 334 IPR044560 -
Vvi18g179 373 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 339 372 IPR044560 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g179 - - - vvi:100259199 742.265
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g181 Vvi18g179 ECH
Vvi3g182 Vvi18g179 ECH
Vvi4g1207 Vvi18g179 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g179 . . . . . . . Bma01g02703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00911 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001099 3 2 7 1 2 3 4 2 2 3 2 2 0 4 2 3 2 5 2 2 2 2 1 2 2 1 2 4 2 7 78