Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g180 ATGACCCAAGATGTGGAAATGAAAGACCGTACAGCTCCTTCGAACTCTGTTTCTTCCACTGGTCCATCCACTTTGCACCAGTTGAAGGAGATAGCATCACTCATCGAGACGGGTTCATACACCAAAGAGGTGCGGAGAATTGTGCGAGCTATTCGCCTCACGATGGCATTGAGGAGGAAGCTGAAGGTGCCAGTGCTCTCTGCCTTTCTTGATTTCGCTCTTGTGCCAGTTTCTGAAGCCCACTCCAGGTTGTCTGCGTATCTTCCCAAAGAAGATGAGCATGACATGGAAGTTGACACAGCAACATCTGCCGATCAAGCTCCAGTGAAGCACTTAGTGCCCGAGCTTGAGATTTACTGTTACTTGCTTGTATTAGTTTTTCTGATTGATCAGAAAAAGTACAATGAGGCTAAAGCATGTTCTTCAGCAAGCATTGTTCGGCTTAAGAATCTGAATAGAAGAACTGTTGATGTTTTAGCATCCAAATTATACTTGTATTACTCATATAGCTATGAGCTTACAGGTCATCTAGCTGAAATTCGAGGCAACCTCCTTGGCTTGCACCGGATTACAACATTGCGCCATGATGAGCTGGGCCAGGAAACACTCCTCAACCTCCTATTACGAAACTACCTCCACTACAACTTGTATGATCAGGCAGAAAAGCTGAGATCAAAGGCACCACGGTTCGAAGCACACTCAAATCAGCAGTTCTGTAGATATCTTTTCTACCTTGGGAAGATCCGTACAATTCAATTGGAGTATACCGATGCAAAAGAGAGTCTTCTACAGGCTGCTCGTAAGGCCCCTGCTGCAGCTCGAGGATTCCGAATTCAATGTAACAAGTGGGCCATTATAGTCCGTTTACTGCTGGGAGAGATACCTGAAAGAACAGTATTCATGCAGAAAGGAATGGAGAAGGCTTTGAGGCCGTACTTTGAACTTACAAATGCTGTTCGGATTGGTGATTTGGAGCTGTTTAGGTCTGTTGCAGAAAAATTTGCTGGCACTTTCAGTACTGATCGAATCCACAATCTGATTGTTCGGCTGCGGCATAATGTCATTAGGACTGGGCTGCGGAACATTAGCATCTCTTATTCCCGCATCTCGCTTGCAGATATCGCTAGCAAACTGAGATTGGATTCTGCAAACCCTGTTGCGGATGCTGAGAGCATTGTGGCCAAGGCTATTCATGATGGTGCAATTGATGCCACGTTGGATCATTCAAACGGCTGGATGGTATCAAAAGAGACCGGAGACATCTACTCCACAATTGAGCCGCAAATTGCTTTCAACTCCCGGATTACTTTTTGCCTGAACATGCACAATGAAGCAGTTCGGGCCCTCCGGTACCCACCAAACACACAAAAAGAGAAGGAAAGTGCTGAGAAGAGGAGGGAGAGGCAACAGCAGGAGCAAGAACTTGCAAAGCATATTGCAGAGGAGGAGGATGATGATTTCTGA 1464 45.9 MTQDVEMKDRTAPSNSVSSTGPSTLHQLKEIASLIETGSYTKEVRRIVRAIRLTMALRRKLKVPVLSAFLDFALVPVSEAHSRLSAYLPKEDEHDMEVDTATSADQAPVKHLVPELEIYCYLLVLVFLIDQKKYNEAKACSSASIVRLKNLNRRTVDVLASKLYLYYSYSYELTGHLAEIRGNLLGLHRITTLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPAAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRSVAEKFAGTFSTDRIHNLIVRLRHNVIRTGLRNISISYSRISLADIASKLRLDSANPVADAESIVAKAIHDGAIDATLDHSNGWMVSKETGDIYSTIEPQIAFNSRITFCLNMHNEAVRALRYPPNTQKEKESAEKRRERQQQEQELAKHIAEEEDDDF* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1772216 1777433 + Vvi18g180 Vvi18g180 779883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g180 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Vvi18g180 487 SUPERFAMILY Winged helix DNA-binding domain 344 422 IPR036390 -
Vvi18g180 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Vvi18g180 487 Coils Coil 454 481 - -
Vvi18g180 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Vvi18g180 487 Pfam PCI domain 311 416 IPR000717 -
Vvi18g180 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Vvi18g180 487 MobiDBLite consensus disorder prediction 1 23 - -
Vvi18g180 487 MobiDBLite consensus disorder prediction 450 487 - -
Vvi18g180 487 Gene3D - 234 417 - -
Vvi18g180 487 SMART PINT_4 345 438 IPR000717 -
Vvi18g180 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Vvi18g180 487 MobiDBLite consensus disorder prediction 453 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g180 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - vvi:100255691 901.738
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g179 Vvi18g180 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1240 Cone8ag1295 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65