Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g184 ATGATAACATCCCTCATCCCTCATCCGAGATTAGTTCCCAAGTTTCTCTCGAGTGTGAGTTTTGCAAGAGCTCTCAGGAGAACTACTGTGATCAGACTCTGTTCACCTACAATGGAATTTTCTGGGATGGCGAAGAAAAGGACCCTGGATTTCATATTGGACACAGCGTCCGCCAACCACTCCCTCGGAAACTACCTAGAATTGCTGAAAGTGAACGGGACTTTGGTGGTTGTGGGGGCACCGGATAAGCCCATGGAGCTGCCTTCTTTCCCTTTGATTTTTGGCAAAAGAATAATAAAAGGGAGCATCTTAGGTGGGATGAAAGAGACACAGGAGATGATGGATGTGTGTGGGCAGCGCAACATAAAGTCGGATATCGAGGTGGTGAAGACAGACCAGATCAACCAGGCACTGGATAGGCTTTCTAGGAATGATGTTCGGTATCGTTTTGTAATTGACATTGCCGGCAAGTCTGCAAAGATGTAG 486 46.91 MITSLIPHPRLVPKFLSSVSFARALRRTTVIRLCSPTMEFSGMAKKRTLDFILDTASANHSLGNYLELLKVNGTLVVVGAPDKPMELPSFPLIFGKRIIKGSILGGMKETQEMMDVCGQRNIKSDIEVVKTDQINQALDRLSRNDVRYRFVIDIAGKSAKM* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1784959 1786659 - Vvi18g184 Vvi18g184 779887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g184 161 Pfam Zinc-binding dehydrogenase 40 116 IPR013149 -
Vvi18g184 161 PANTHER ALDEHYDE REDUCTASE 44 158 - -
Vvi18g184 161 Gene3D - 125 154 - -
Vvi18g184 161 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 44 158 - -
Vvi18g184 161 Gene3D - 43 124 - -
Vvi18g184 161 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 123 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g184 K00083 CAD; cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] - vvi:100262607 192.586
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g184 . . . . . . . . . . Cma01g01986 . Car01g01557 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00399 . . . Bda08g01193 . . . . . . Cmo01g02044 . . . . . . Cpe02g00059 . . . . . . . Cla05g01605 Cam05g1718 Cec05g1719 Cco05g1779 Clacu05g1707 Cmu05g1594 Cre05g1713 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031724 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1