Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g187 ATGACCCACACCAGCCTCAAACCTTCCAGAGCATCCAAACCCGTTGTTCTCTCTTCCATTGGCAGCACTAAAGCCTCCTACAATGCCCTGGTTTTTGAGGCTGCTAGGCTTTTGGGTCCTCCAGCAAAATTTGACGCTTCAAAGCTGAAAGTTGTGCCCATGGGAGAAGAAATTGATAATTACTCTGGAATCAGCCCAAGAGTATACACCCTCTCCCACTGTGACTTTACAGCTAATCTAACCTTAACCATATCCAATATCATCAGCCTTGATCAGTTGAAAGGGTGGTACAACAAGGATGATGTGGTTGCTGAGTGGAAGGAAGTAAAGGGGGAAAAGTGTCTTCATGTTCACTGTTATTTGAGTGGCCCAAGCCTCTTTCTTGACTTGGCAGCTGAATTCAGATACCACATATTCTCCAAGGAATTGCCTCTGGTGCTTAAAGCTGTGTTACATGGGGATTCTGTGTTCTTCAGAGAACATCCAGAGCTAATGGATGCAATAGTTCGGGTCTATTTCCACTCCAGCTCAACTAAGTACAATTGTATGGAATGTTGGGGGCCACTGAAGGATGCTGCACAGGGAAGACAGGGAGATCACACCCATGGTTCGTTAACAGCAAGTAAGGAGGGTTCTCGTCCTCAAAATTGGGGAAACCCGAAATCCATCTTCCAAGCTTTCTTCACGTTCCTTCTTTGA 699 45.78 MTHTSLKPSRASKPVVLSSIGSTKASYNALVFEAARLLGPPAKFDASKLKVVPMGEEIDNYSGISPRVYTLSHCDFTANLTLTISNIISLDQLKGWYNKDDVVAEWKEVKGEKCLHVHCYLSGPSLFLDLAAEFRYHIFSKELPLVLKAVLHGDSVFFREHPELMDAIVRVYFHSSSTKYNCMECWGPLKDAAQGRQGDHTHGSLTASKEGSRPQNWGNPKSIFQAFFTFLL* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1811108 1814383 - Vvi18g187 Vvi18g187 779890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g187 232 Pfam Staygreen protein 43 192 IPR024438 -
Vvi18g187 232 MobiDBLite consensus disorder prediction 199 218 - -
Vvi18g187 232 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 8 232 - -
Vvi18g187 232 MobiDBLite consensus disorder prediction 196 218 - -
Vvi18g187 232 PANTHER PROTEIN STAY-GREEN LIKE, CHLOROPLASTIC 8 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g187 K22013 SGR, SGRL; magnesium dechelatase [EC:4.99.1.10] - vvi:100252353 478.404
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g187 Blo01g01313 . Bda01g00683 . Bpe02g00622 . . Bma01g02097 Cmo04g02523 Cmo15g00651 . . . . Sed01g0943 . . Bhi04g01844 Tan11g1216 Cmetu09g0061 . Hepe02g2741 . Lcy10g1292 Cla08g00644 Cam08g1066 Cec08g0651 Cco08g0762 Clacu08g0772 . Cre08g0580 . . . Cone20ag0416 . . . Cme03g00440 . . . . . . . . . . . . . Car04g02320 Car15g00589 Cpe01g02086 . . . . . . . . . . . . . . . Lsi08g00503 . Chy03g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008497 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35