Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g190 ATGCTTGGACTAGTGATGCATATCAGGCCACAGGATGCTACAATCTTCTCTGTTCAGGTTTTATTCAAATCAACAGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAATCTCCAAAGACATGTACTACTGTTTCATGGCATGGGAGGATATATCTCATCACAAGAGCACAGAATGTTATCGATGAGTTCTTCCAGCCAGTAGAGCCAACTTTAGGGCAAATAGTTAGGCAGAAATTGAGTGAAGGAAGGAAGGCGAAACAAGCAACTGTGAGATCCTCTGTGCCGGAAGTGTTGTTGGAGATAACAAAGTTTTGTGATCTTTATCTCATGGAAAGAGTTCTGGATGATGAAAGTGAAAGAAAGGTGTTTCTGGCTTTAGAAGATGCTGGGGTTTTCACATCTGGTGACTTGGTCCAAGGCAAGGTTCTTTTTTTTGTAGCACAGAGAATGGGCGGTCATCCTTTGTTCGGCAACTTAAACCAGATTGGTATATTGACATAA 540 42.59 MLGLVMHIRPQDATIFSVQVLFKSTVTRLGGYDKVTSCKLWRQVGESFKSPKTCTTVSWHGRIYLITRAQNVIDEFFQPVEPTLGQIVRQKLSEGRKAKQATVRSSVPEVLLEITKFCDLYLMERVLDDESERKVFLALEDAGVFTSGDLVQGKVLFFVAQRMGGHPLFGNLNQIGILT* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1824484 1825384 - Vvi18g190 Vvi18g190 779893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g190 179 Gene3D - 19 76 IPR036431 GO:0003677
Vvi18g190 179 PANTHER PEROXISOME BIOGENESIS PROTEIN 22 99 159 - -
Vvi18g190 179 PANTHER PEROXISOME BIOGENESIS PROTEIN 22 68 98 - -
Vvi18g190 179 SUPERFAMILY ARID-like 24 60 IPR036431 GO:0003677
Vvi18g190 179 CDD ARID 21 60 - -
Vvi18g190 179 PANTHER PEROXISOME BIOGENESIS PROTEIN 22 68 98 IPR037485 GO:0007031
Vvi18g190 179 PANTHER PEROXISOME BIOGENESIS PROTEIN 22 99 159 IPR037485 GO:0007031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g190 - - - vvi:100267138 150.214
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068916 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1