Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g194 ATGGCAGAAGCAGCGGTGGCTCAGGCCAAGCCTGGTTGCCCGGATCGCTGTGGGAATGTTAGCATCCCATATCCATTCGGCACAAAGAAAGACTGCAACCACAGTCAACATTTTCTGTTGCACTGCAACGATTCAGTGATGCCTCCCAAACTAACTCTAGGGATGAACTTACATGTGGTGAGCATCTCCTTAGGTGAGTTGAAAATCTTGAACTTTCTGGGCAGGGATTGTTATAATAGTTATGGCGGGCTGGTTTACGAGAACGACCCCTGGCTGCGTTTAGGCTCAGGTTACACAATCTCTGGAAAGAGAAACAAGTTCATTGCAGTTGGCTGCGACACGTACGCGATTGTTCGGGCTTATAAAGGTGAAGAAAGGTACACAACTGGGTGCATGTCTGTATGTGATAGCATCACAAATGTAAAAAGTGGATCTTGCTCTGGGATTGGTTGTTGTGAGACCTCCATTCCTGAAGGAACTACCAATTTTACTGTTAAGTTAAGCAGCTATAATAACCACAGAAGCGTTTGGGCCTTCAATCCCTGCAGCTATGCTTTTGTTGTTGAAGAAACACACTTCAAGTTCTCTTCCAATCAATTTAGGGATCTCAATAATACAGAAAATCTTCCCGTGGTGTTGGACTGGAGAATAGGCAAAGAAAGGTGCAAGGCAGCACGAAAAACCGAGACTTACGCCTGTAAGGGGAAAAGCGAGTGCTACGAACCCGATGATTGGTCCGGCTATCTTTGCAAGTGCTTGGATGGTTACCATGGGAATCCTTACCTCCCTGATGGTTGCCAAGATATTAATGAATGTGATGATCCAAGCCTCAATAAGTGTGTAAAAAAAGGGAGATGCAAGAACACCCCAGGGAATTATACTTGTTCTTGTCCCAAGGGGTACCATGGAGATGGCAGACAAGATGGAGATCGCTGTAATCTAGATCACTTACAAGTGATTCCTGTTGTTCTTGATGATAATCTTTTTCAAGTTCTTGACAAGCACATAGTAAATGAGGGAAATATTGAACAGTTGAGGGAAGCTGCAAACCTTGCAAAAAGGTGCTTAAGATTGAAAGGAGATGAGAGACCTACCATGAAGGAAGTATCAATGGAGTTAGAAAGAATTAAAATGATGGAAAAACAGGCATGGATTGATTCAAAAGAAAAGGAACAGTTACATGGTGAATCTTCTCAGGCATATGATAATGATTGTAGTTTTGGTTTTACAAGTGCTTCATTTAATAGTTTAAGGTTCTTTGCGGTTGGTTGCGACACTTATGCACTTCTCCAAGGCTACCAAGGAGGAGATCTTTACACAACTGGCTGCATGTCTATATGTTCCAGCGAGAAGCAAGTCCAGGATGGATCTTGCTCAGGGGCTGGTTGTTGCCAGGTCTCATTCCCAGAAGGATTAGATGATACTACTCTGACATTAAGCAGCTACTTCAATCATACAAAAGTTCATGACTTCAATCCCTGCAGCTATGCTTTTATTGCCGAAGAATCAGCCTTCAATTTCTCCTCCAAAAATCTTACCAATTTACAGGATATGGAAAAGCTTCCTAGGGTGGTTGATTGGTCAATTGGCAATGAAACATGCCAGGTGGCTAAAACCAACCCGAGCAGTTACGCCTGTAAGGAGAATAGCACGTGCTCGGAACCCAGTGGCCGATCCGGCTATCTTTGCAAGTGCTTTGATGGTTACCATGGGAATCCTTACCTCGATGGTTGCCAAGATATTGATGAATGTGAGAATTCAAGCCTCAATAAGTGTGTAGAAAAAGCAAGGTGCAAGAACATCCCAGGGAATTATACTTGTTCTTGCAGGAAGGGGTACCATGGTGATGGCAGAGAAGATGGTGATGGCTGTAATCCAAATATGTTGCAAGTAATTCAGATTGCCCTCGGTGTCAGCATTGGCCTTATATCATTACTAATGGGTAGCTCTTGGTTATACTGGGGACTCAAGAAAAGGAAGTTCATTAAACTCAAAAAGAAGTTCTTTGAGCAAAATGGTGGTTTAATGCTGCGCCAACAACTTTCTAGTCAAGAAGGATCCAATGAAACAGTTAAAATCTTTTCTGCTGAAGAGCTTGAGAAGGCCACCGACAAGTATGCTGAGAATAAAATCATTGGTCAAGGGGGATATGGAACAGTTTATAAAGGAACCTTAACTAATGGGAGAATAGTTGCGATCAAGAAGTCGAAGATGGTGGATAAAATTCTTGATGAACGCATAGTGAACGAGGAAAATATTGAGCAGTTAAAGGAAACTGCCAACCTTGCAAAAAAATGCTTGAAATTAAAAGGAGATGAGAGGCCTACTATGAAAGAAGTAGCAATGAAGCTAGAAAGAATGAGAATGGTGGAAATGCATCCATGGACTGATCCAGAAGAGAATGAATACTTACTCGGTGAATCTTCCCATACAGTTGATAATGGTTGTAGTATTGGTTCCACAAATACTGCATACGACAGCTTAAAGGGCCATATAATGCTACCCAATAAGGACAAAAATGAGTCAAAGGGGGTATTTTTGTCTATTCCCATCTCATTCAAAGGTCTCCTCAAATATAATGTCACCGTCCACACCTATCACAACCACACTTTTACCTGGAGCTTCAATCCCTGTAGCTATACTTTCTTGGTGGAGGAAGGGTCTTTCAATTTCTCCACGGCAGATCTTATAGATCTACAAAAGATAGATAAGGTATCAACGGTGCTGGATTGGGCAGTTGGGAATCAAACATGCGAAGAAGCTCAAAAGAACTCGACAAGTTACGCATGTAAGGAGAATAGCAATTATGTTGACGAGTGTGAAGATCCAAAACTCAACGACTGCACCGACCGCTGTACTAACACTATAGGAGGTTACAATTGCTCTTGCCCATGGGGTCACCATGGGCATGGGAGAGGCAAAGATGGTTGCACCGCGGATCAATTGCTATTCATTAAGATTACTATTGGTGTAGGCGTCGGTCTTATAGTATTGTTGACAAGTAGCTCATGGTTGTACTGGATACTCAAGAAAAGGAAGTTTCTCAAAGTCAAAGAAAAGTATTTTCGACAAAATGGTGGTTTGATTTTAGAACAACAACTTTCTAAACGAGAAGGATCCAACGAAAGAAGCAAGATTTTTACAGCAGAAGAGCTTGAAAAAGCCACCAACAAATATAATGAAAGCAAAATCATTGGTCGAGGAGGATTCGGTATTGACAATATATCGCACGAGGTAAATGGTGAAGAACTCAATGAAGTTGCTTTGCTTGCAAAGAGATGTTTGGAATTAAAAGGTGAAGATAGACCTACTATGAAGGAAGTAGCAATGGAACTTGAAGGTATGAGAAAAATGAAAATGCATCCATGGATTGGTGAATTGAATTCAGAAGAGACGATTCACTTACTTGATGAATCCTCGAATACTCATCAATATGATACTAATGGTAATGTCACGACTGTGTATGATAGCATTAGGGATCATATAACATTACCATTACATAATGCTAGATAA 3513 41.47 MAEAAVAQAKPGCPDRCGNVSIPYPFGTKKDCNHSQHFLLHCNDSVMPPKLTLGMNLHVVSISLGELKILNFLGRDCYNSYGGLVYENDPWLRLGSGYTISGKRNKFIAVGCDTYAIVRAYKGEERYTTGCMSVCDSITNVKSGSCSGIGCCETSIPEGTTNFTVKLSSYNNHRSVWAFNPCSYAFVVEETHFKFSSNQFRDLNNTENLPVVLDWRIGKERCKAARKTETYACKGKSECYEPDDWSGYLCKCLDGYHGNPYLPDGCQDINECDDPSLNKCVKKGRCKNTPGNYTCSCPKGYHGDGRQDGDRCNLDHLQVIPVVLDDNLFQVLDKHIVNEGNIEQLREAANLAKRCLRLKGDERPTMKEVSMELERIKMMEKQAWIDSKEKEQLHGESSQAYDNDCSFGFTSASFNSLRFFAVGCDTYALLQGYQGGDLYTTGCMSICSSEKQVQDGSCSGAGCCQVSFPEGLDDTTLTLSSYFNHTKVHDFNPCSYAFIAEESAFNFSSKNLTNLQDMEKLPRVVDWSIGNETCQVAKTNPSSYACKENSTCSEPSGRSGYLCKCFDGYHGNPYLDGCQDIDECENSSLNKCVEKARCKNIPGNYTCSCRKGYHGDGREDGDGCNPNMLQVIQIALGVSIGLISLLMGSSWLYWGLKKRKFIKLKKKFFEQNGGLMLRQQLSSQEGSNETVKIFSAEELEKATDKYAENKIIGQGGYGTVYKGTLTNGRIVAIKKSKMVDKILDERIVNEENIEQLKETANLAKKCLKLKGDERPTMKEVAMKLERMRMVEMHPWTDPEENEYLLGESSHTVDNGCSIGSTNTAYDSLKGHIMLPNKDKNESKGVFLSIPISFKGLLKYNVTVHTYHNHTFTWSFNPCSYTFLVEEGSFNFSTADLIDLQKIDKVSTVLDWAVGNQTCEEAQKNSTSYACKENSNYVDECEDPKLNDCTDRCTNTIGGYNCSCPWGHHGHGRGKDGCTADQLLFIKITIGVGVGLIVLLTSSSWLYWILKKRKFLKVKEKYFRQNGGLILEQQLSKREGSNERSKIFTAEELEKATNKYNESKIIGRGGFGIDNISHEVNGEELNEVALLAKRCLELKGEDRPTMKEVAMELEGMRKMKMHPWIGELNSEETIHLLDESSNTHQYDTNGNVTTVYDSIRDHITLPLHNAR* 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1877360 1894797 - Vvi18g194 Vvi18g194 779897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g194 1170 ProSitePatterns Calcium-binding EGF-like domain signature. 268 295 IPR018097 GO:0005509
Vvi18g194 1170 Gene3D Laminin 582 621 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 411 740 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 741 805 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 4 319 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 322 390 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 854 938 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 1073 1134 - -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 937 1071 - -
Vvi18g194 1170 ProSiteProfiles EGF-like domain profile. 268 313 IPR000742 -
Vvi18g194 1170 Pfam Calcium-binding EGF domain 268 312 IPR001881 GO:0005509
Vvi18g194 1170 Pfam Calcium-binding EGF domain 937 971 IPR001881 GO:0005509
Vvi18g194 1170 ProSitePatterns Calcium-binding EGF-like domain signature. 580 607 IPR018097 GO:0005509
Vvi18g194 1170 ProSitePatterns Protein kinases ATP-binding region signature. 712 735 IPR017441 GO:0005524
Vvi18g194 1170 Gene3D Phosphorylase Kinase; domain 1 677 766 - -
Vvi18g194 1170 Gene3D Transferase(Phosphotransferase) domain 1 309 402 - -
Vvi18g194 1170 Gene3D Laminin 937 979 - -
Vvi18g194 1170 SMART egfca_6 268 313 IPR001881 GO:0005509
Vvi18g194 1170 SMART egfca_6 937 978 IPR001881 GO:0005509
Vvi18g194 1170 SMART egfca_6 580 625 IPR001881 GO:0005509
Vvi18g194 1170 Gene3D Laminin 532 581 - -
Vvi18g194 1170 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 286 297 IPR000152 -
Vvi18g194 1170 SUPERFAMILY EGF/Laminin 267 305 - -
Vvi18g194 1170 Pfam Wall-associated receptor kinase galacturonan-binding 13 66 IPR025287 GO:0030247
Vvi18g194 1170 SUPERFAMILY Protein kinase-like (PK-like) 691 753 IPR011009 -
Vvi18g194 1170 Gene3D Laminin 220 308 - -
Vvi18g194 1170 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 598 609 IPR000152 -
Vvi18g194 1170 Coils Coil 739 759 - -
Vvi18g194 1170 CDD EGF_CA 580 616 - -
Vvi18g194 1170 ProSiteProfiles EGF-like domain profile. 580 619 IPR000742 -
Vvi18g194 1170 SUPERFAMILY EGF/Laminin 937 972 - -
Vvi18g194 1170 CDD EGF_CA 268 304 - -
Vvi18g194 1170 CDD EGF_CA 937 970 - -
Vvi18g194 1170 ProSitePatterns EGF-like domain signature 2. 563 578 IPR000742 -
Vvi18g194 1170 SMART egf_5 271 313 IPR000742 -
Vvi18g194 1170 SMART egf_5 939 978 IPR000742 -
Vvi18g194 1170 SMART egf_5 533 579 IPR000742 -
Vvi18g194 1170 SMART egf_5 221 267 IPR000742 -
Vvi18g194 1170 SMART egf_5 583 625 IPR000742 -
Vvi18g194 1170 Pfam EGF domain 590 618 IPR024731 -
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 322 390 IPR045274 GO:0007166
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1073 1134 IPR045274 GO:0007166
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 411 740 IPR045274 GO:0007166
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 937 1071 IPR045274 GO:0007166
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 741 805 IPR045274 GO:0007166
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 854 938 IPR045274 GO:0007166
Vvi18g194 1170 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 319 IPR045274 GO:0007166
Vvi18g194 1170 SUPERFAMILY EGF/Laminin 579 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g194 - - - vvi:100852995 707.983
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g194 . . . . . . . . Cmo04g02520 . Cma01g01027 . . . . . . Bhi04g01849 . . . . . Lcy10g1283 Cla08g00643 . . . . . . . Cone7ag1496 . . . . . Cme03g00456 Blo17g00161 . . . . Bpe14g00403 . Bma02g00195 . . . . . . . . Cpe02g00871 . . . . . . . . . . . . . . Lsi08g00497 . Chy03g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3