Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g195 ATGCCCTTTTCGCCACTCCTTCTCAGACTCAGGGACTCAGACCCAGAAATGCTTCTTCGTCAACAACACAGAGTAGTTATCTCCTCTTCACCCACCATCATGGCCTCCAAACAACTCCTCAAATCCACTCCTCTCACGCTGCCTCTTAGGTTAAACCTTTACTCACCCGTCACCATCTCCGCATTCCCTTTAAAATCCACCTCCAGAATCCTCCCAGTCTCCCTCAAAACCTCCGCCTTACCTTACACTTCCCATTCCAATGTCCCCAGACCAGTTTATTCGGAGAACCCAGAAGACACCAGTAATTTCTCCGCTCGATTCAACGTCTTGAAGAAGAAACTGGAGGCGATAGGCTTTGACACACAAATGCTTAAAACTGGGCAGTACGATAACTTACTGTGTCCCGCGTGTAAAGGTGGTTATTCAATGGAGAAAAGCTTATCTCTTGTCATCACTTTAGATGGGAATTGTGCTGTATGGACATGTCATCGAGGAAAATGTGGGTGGAGAGGTGACACACGGGCCTTTGCAAATGGCAGATCATCATATGGAAGGTTGAACCAAATTACCAAAATTAAGCCCAAAAGAGAAATCACAGAAAAGAGTCTGGGTTTAGAACCACTATGTAGGGAGCTAATTGCATATTTTGGAGAGCGAATGATATCAGAAAAAACATTGGCAAGAAATTCTGTCATGCAGAAAACATATGGCGATGAGTTTATTATTGCATTTACTTATCGAAGAAATGGGGTGTTTGTGAGTTGCAAATATCGGGATGTTAACAAGAACTTTTGGCAGGAAGAGGATACTGAAAAAATATTCTATGGTGTGGATGATATAAAGGCAGCAAGTGATATAATCATTGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTAATGGAGCACCTGCATCAGTTTCTACAAAAGTGTTCAAATCTGATGAAGAGGACACAAAATATCAGTATCTATGGAACTGCAAGGAGTATCTGGAGAAGGCATCTCGCATTATACTTGCAACTGATGGGGATTCACCTGGTCTTGCCTTAGCTGAAGAACTTGCACGCCGCCTTGGAAGAGAAAGATGTTGGCGAGTAAAATGGCCTAAGAAAAATGAAGTTGATCATTTCAAAGATGCGAATGAGGTGCTTATGTATTTAGGACCTGATGCTCTGAAAGAAGTAATTGAGAATGCTGAGTTATATCCTATTCAAGGATTGTTCAACTTTAGCCATTACTTTGATGAGATTGATGCATATTATCATCAAGCTCTTGGTTTTGAGCTTGGTGTTGCAACTGGATGGAGGGGTCTGAATGGATTATACAATGTAAGCACAATATTTCATTTATTACTGTTTACTATGCTTGTGCAGTCTGGGGCAGTGGACCATTGGGGGATTTTGTTGGAAAGGATTTGTCAAAAGCTTAGTGGATTAGTTCGAGAGCATGCCAGGAAACTTTTGGAGAAACACATAAAGAAGCCTTTCTTTGATGCAGGGTATGGGGAATCTATTGAACGCATGAGTATTGAGGAGTTTGAGCTAGGGAAGAAATGGTTAAGTGAAACATTTTATCTCATACGGTGCGAGAATGATTCTCTTCCAAATATAAAATGGGTTCTTGATCTTGCAAAAGCAGCGGTTCTAAGGCATGGAGTGCGTGGGCTTGTAATTGATCCATACAATGAACTTGATCATCAGCGTCCTGCAAACCAGACAGAAACAGAGTATGTGAGTCAGATGCTAACAATAATCAAACGATTTGCTCAGCATCACTCTTGTCATGTTTGGTTTGTAGCGCATCCTAGACAGTTGCACCACTGGGATGGGGGTCCACCTAATATGTATGATATCAGTGGAAGTGCACACTTCATAAATAAATGTGACAATGGAATTGTTATTCATCGTAATCGAAATCCAGATGCTGGGCCTGTTGATCAAGTGCAAGTTTGTGTGCGAAAGGTACGGAATAAAGTTATAGGAACAACAGGCGATGCCTTCTTGTCATATGATAGGATAACTGGTGTGTACACGGACGTTGACGAGACTTCTGGGAAATGA 2091 41.8 MPFSPLLLRLRDSDPEMLLRQQHRVVISSSPTIMASKQLLKSTPLTLPLRLNLYSPVTISAFPLKSTSRILPVSLKTSALPYTSHSNVPRPVYSENPEDTSNFSARFNVLKKKLEAIGFDTQMLKTGQYDNLLCPACKGGYSMEKSLSLVITLDGNCAVWTCHRGKCGWRGDTRAFANGRSSYGRLNQITKIKPKREITEKSLGLEPLCRELIAYFGERMISEKTLARNSVMQKTYGDEFIIAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFYGVDDIKAASDIIIVEGEIDKLSMEEAGFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLWNCKEYLEKASRIILATDGDSPGLALAEELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPDALKEVIENAELYPIQGLFNFSHYFDEIDAYYHQALGFELGVATGWRGLNGLYNVSTIFHLLLFTMLVQSGAVDHWGILLERICQKLSGLVREHARKLLEKHIKKPFFDAGYGESIERMSIEEFELGKKWLSETFYLIRCENDSLPNIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPANQTETEYVSQMLTIIKRFAQHHSCHVWFVAHPRQLHHWDGGPPNMYDISGSAHFINKCDNGIVIHRNRNPDAGPVDQVQVCVRKVRNKVIGTTGDAFLSYDRITGVYTDVDETSGK* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1897285 1948700 - Vvi18g195 Vvi18g195 779898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g195 696 ProSiteProfiles Superfamily 4 helicase domain profile. 460 694 IPR007694 GO:0003678|GO:0005524|GO:0006260
Vvi18g195 696 Gene3D - 271 413 - -
Vvi18g195 696 SUPERFAMILY DNA primase core 215 395 - -
Vvi18g195 696 CDD TOPRIM_primases 286 379 IPR034154 -
Vvi18g195 696 PANTHER T7-LIKE MITOCHONDRIAL DNA HELICASE 60 688 IPR027032 GO:0003697|GO:0043139
Vvi18g195 696 SMART toprim5 284 373 IPR006171 -
Vvi18g195 696 Gene3D - 476 690 IPR027417 -
Vvi18g195 696 Pfam Toprim domain 285 376 IPR006171 -
Vvi18g195 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 673 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g195 K17680 PEO1; twinkle protein [EC:5.6.2.3] - vvi:100247126 1339.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008305 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 3 35