Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g196 ATGGATTGTCACTGCATCAAGCTTATGCATGCTGTGTTGCTATGGGTGATTGCAGCAGCAGCAGCAGCAGCAGGAACAGCATCAGCCCAAACCATTGCGCCGGACTGCCAAGCTACATGTGGGGGCGTCACCATTCCATACCCGTTTGGCACAACGGAAGGTTGTTACTTGAACAGAAACTACTTGATAACTTGTAACAACACCTTCAGCCCTCCAAAACCATTTCTCCGGACCGGGTGTTGCCAGACCTCCATTCCTAAAGGTCTCCTCAATTTTAATGTGACTGTTAGCAGCTTTAGCAACCACTCCGACATCTTGAGCTTTAATCCCTGCAGCTATACTTTCTTAACTGAAGAAGACTCCTTCAACTTCTCTTCTGCTGATCTTATAGATCTGCAGAACAGAAGTCACGTCCCAACTGTGCTGGATTGGGCCGTGGGAGAGCAAACGTGTGAAGAAGCTCAGAAGAACTTGACAAGTTTCGCATGTCAGGCAAATAGTATTTGTTTTGACTCCAACAATGATTATGGGTATCAATGCAATTGCTCAGCAGGTTACCAAGGGAACCCATACCTCCCCAGTGGTTGCCAAGATATTGACGAGTGTGGAGATCCAAATCTCAATCAGTGCACAAAAAATTGCATTAACACACTAGGGAGTTATACTTGTTCTTGCCCCAAAGGGTACCATGGAGATGGCAGACAAGATGGAGAAGGTTGCATTGCTGATGATCAGTTACTAGCGATCAAGATTGCCATTGGTATTAGCATTGGCTTTTTGGCATTAATAATTGGGAGCTCATGGTTGTATTGGATACACAAGAGAAGAAAGTTCATTAAACTCAAAGAAAAATTCTTTTGGCAAAATGGTGGTTTAATGTTACAACAACAACTTTCTGGGCAAGACGGATCCAATGAAACGGTTAAAATTTTTACTGCAGAAGAGCTTGAGAAGGCTACCAACAAGTACGATGAAGGTAAAATCATCGGCACTGGAGGATATGGAACAGTTTATAAGGGAATTTTGGTTGATGGTAGAACAGTTGCAATCAAGAAGTCTAAGATAGTGGATCAAAGCCAAATTGAGCAATTTATAAATGAGGTAGTTATACTATCTCAAATCAATCATAGAAATGTGGTCAAACTCTTAGGTTGTTGTCTGGAGACTGAAGTTCCTTTATTAGTTTATGAATTCATCACCAATGGCACCTTGTTTGACCACATTCATGATGAAGGTAAGGCATCCAACATCTCATGGGAAGCTCGTCTAAGGATTGCAGCAGAAACTGCTGAAGATCGATTATTTCAAGTTCTTGAAAACTATATAATGAAGGATGAAAATACTCAACAGATTAAAGAAGTTGCTACACTTGCGAAGAAATGCTTAAGAGTAAAAGGAGAAGAAAGACCCTCTATGAAGGACGTAACAATGGAACTAGAGAGGATAAGAAATATAAAAAACAACCGATGGATTGACCAGCAAAAGCAGCATCACAAACCATTAAGCCAGACTGCGAAGCTACATGTGGGGATGTTAGCATCCCATACCCTTTTGGCACAAGAGAAGGATCATCGGCTGCGCATCTACACCTTTGTGGGCCGTGATTGCTACGACAAGATGGGTAAGCAATATGATCAGCCAACTTTAGCCTATGCGAACCTACCAAGGTTCCCCTTCTCCGACAAAGGTAACAGATTCACAGCCATTGGATGTGACACCATCGCTGTATTCAATGGTTTGAACGGTGCAGATGACTTCACAACAGGGTGTTTGTCCCTGTGTAACAGCATCCGAAGTGTAACTAACGGGTCCTGCTCCGGCATAGGCTTCTGGAGCTTCAATCCCTGCAGTTACGCCTTCTTAGCGGAAGAAGAATCTTTCAACTTCTCCTCAGCTGATCTTAAAGATCTGCAAAACAGAACTGTTTTCCCCACCTTGCTTGATTGGGCGGTCGGGAACAAAACATGCGAAGAAGCCAAGAAGAACTTGACGAGTTACGCATGTAAAGATAATAGCTATTGTTATAACTCCGATAATGGTCCTGGATACCGCTGCAACTGCTCCTCTGGTTTCCAGGGGAATCCATATCTTCCCAATGGCTGTCAAGATATTGATGAGTGTGCAGATCCAAAGCGCAACGAGTGTACAAAGGTTTGCATTAACACACCCGGGAGTTATACTTGTTCTTGCCCCAAGGGGTACCATGGAAATGGCAGACGGGATGAAAATGGCGATGGTTGCACTCCTCATGATGATCAATTACTAATTGTTAAGATTGCAGTTGGTATTTTCATCGGCCTTATAGCACTACTAATCACTAGCTCATGGCTATATTGGGGACTCAAGAAAAGAAAATTCATCAAGCTCAAAGAAAAGTTCTTTCAGCAAAATGGAGGTTTAATGTTACAACAACAACTTCATGGACGAGAAGGATCTAGTGAATCAGTTAAAATCTTTACAGCTGAAGAACTGGAAAAGGCTACTAATAAGTATGATGAGGATACAATCATTGGTCGAGGAGGATATGGCACACAGCTTAAGGATGTTGCTAAGCTTGCAAAGAGATGCCTAGAAGTAAAAGGGGAGGAGCGACCGACTATGAAGGAAGTGGCAAGGGAATTAGACGGAATGAGAATGATGACAAAACATCCATGGGTTAATATTGAACTGAATCCAGAAGAAACTGAGTACTGTTGCTTGGAGACTAAAGTCCGTTTACCAGTTTATAAATTTGTCACTAAGGGAGTTTTATTTGACCACATACATAAAGAAAATGAAGTTAATCATACTGTAAGAATGTCAGATTATGGAGCTTCAAGTTCAACTAATTTGAACTCAATAATCTATGATGGCGCAATGAACTTGGGTGGGATACTTGGACTTGAGTCTTTACAAACCAGTGGATTGAGAAAAGAAAAATACAAAACATCTACTAGTCTTTCCTATATTATGATTAGAAAACGTGAAGCAATGTTGTTTCTATCCTTAGGAAAACCGGAGGACAAGAGAAGTCTAGCTATGTATTTTCTTTTTTCATTAAGAGATGATCGCCTTTTTCAAGTTCTTGATGAACATATAGTGAATGAAGAAAACATTGAGCAGCTGAAGGAGGCTGCTAAGCTTGCAAAAAGGTGCTTAAGATTGAAAGGAGATGAAAGACCTACTATGAAGGAAGTAGTAATGGAATTAGAAGGATTGAGAATCATGAAAACACATCCATGGATTGATTCACAAGAGAATGAACACTTATTTAGTGATTTTACCCACACATACGATGATGGCGATGGCAATAGCAATGGTGTCACAATTAGTGCTATATATGAAAGCCTACGAGGTCATATGATGTTACCAGGAAATGATAGAAGATGA 3369 41.17 MDCHCIKLMHAVLLWVIAAAAAAAGTASAQTIAPDCQATCGGVTIPYPFGTTEGCYLNRNYLITCNNTFSPPKPFLRTGCCQTSIPKGLLNFNVTVSSFSNHSDILSFNPCSYTFLTEEDSFNFSSADLIDLQNRSHVPTVLDWAVGEQTCEEAQKNLTSFACQANSICFDSNNDYGYQCNCSAGYQGNPYLPSGCQDIDECGDPNLNQCTKNCINTLGSYTCSCPKGYHGDGRQDGEGCIADDQLLAIKIAIGISIGFLALIIGSSWLYWIHKRRKFIKLKEKFFWQNGGLMLQQQLSGQDGSNETVKIFTAEELEKATNKYDEGKIIGTGGYGTVYKGILVDGRTVAIKKSKIVDQSQIEQFINEVVILSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHIHDEGKASNISWEARLRIAAETAEDRLFQVLENYIMKDENTQQIKEVATLAKKCLRVKGEERPSMKDVTMELERIRNIKNNRWIDQQKQHHKPLSQTAKLHVGMLASHTLLAQEKDHRLRIYTFVGRDCYDKMGKQYDQPTLAYANLPRFPFSDKGNRFTAIGCDTIAVFNGLNGADDFTTGCLSLCNSIRSVTNGSCSGIGFWSFNPCSYAFLAEEESFNFSSADLKDLQNRTVFPTLLDWAVGNKTCEEAKKNLTSYACKDNSYCYNSDNGPGYRCNCSSGFQGNPYLPNGCQDIDECADPKRNECTKVCINTPGSYTCSCPKGYHGNGRRDENGDGCTPHDDQLLIVKIAVGIFIGLIALLITSSWLYWGLKKRKFIKLKEKFFQQNGGLMLQQQLHGREGSSESVKIFTAEELEKATNKYDEDTIIGRGGYGTQLKDVAKLAKRCLEVKGEERPTMKEVARELDGMRMMTKHPWVNIELNPEETEYCCLETKVRLPVYKFVTKGVLFDHIHKENEVNHTVRMSDYGASSSTNLNSIIYDGAMNLGGILGLESLQTSGLRKEKYKTSTSLSYIMIRKREAMLFLSLGKPEDKRSLAMYFLFSLRDDRLFQVLDEHIVNEENIEQLKEAAKLAKRCLRLKGDERPTMKEVVMELEGLRIMKTHPWIDSQENEHLFSDFTHTYDDGDGNSNGVTISAIYESLRGHMMLPGNDRR* 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1952679 1968096 - Vvi18g196 Vvi18g196 779899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g196 1122 CDD EGF_CA 703 736 - -
Vvi18g196 1122 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Vvi18g196 1122 Pfam Calcium-binding EGF domain 198 234 IPR001881 GO:0005509
Vvi18g196 1122 Pfam Calcium-binding EGF domain 703 739 IPR001881 GO:0005509
Vvi18g196 1122 SMART egf_5 655 702 IPR000742 -
Vvi18g196 1122 SMART egf_5 150 197 IPR000742 -
Vvi18g196 1122 SMART egf_5 706 748 IPR000742 -
Vvi18g196 1122 SMART egf_5 201 241 IPR000742 -
Vvi18g196 1122 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 719 730 IPR000152 -
Vvi18g196 1122 ProSitePatterns Calcium-binding EGF-like domain signature. 198 223 IPR018097 GO:0005509
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 543 609 IPR045274 GO:0007166
Vvi18g196 1122 SUPERFAMILY EGF/Laminin 702 738 - -
Vvi18g196 1122 Gene3D Laminin 149 200 - -
Vvi18g196 1122 Gene3D Laminin 654 705 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 79 430 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 898 926 - -
Vvi18g196 1122 CDD EGF_CA 198 232 - -
Vvi18g196 1122 SUPERFAMILY Protein kinase-like (PK-like) 823 1061 IPR011009 -
Vvi18g196 1122 SMART egfca_6 198 241 IPR001881 GO:0005509
Vvi18g196 1122 SMART egfca_6 703 748 IPR001881 GO:0005509
Vvi18g196 1122 Gene3D Transferase(Phosphotransferase) domain 1 395 508 - -
Vvi18g196 1122 Gene3D Transferase(Phosphotransferase) domain 1 989 1088 - -
Vvi18g196 1122 Gene3D Laminin 706 743 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 627 847 - -
Vvi18g196 1122 Pfam Protein tyrosine and serine/threonine kinase 326 431 IPR001245 GO:0004672|GO:0006468
Vvi18g196 1122 ProSiteProfiles EGF-like domain profile. 703 742 IPR000742 -
Vvi18g196 1122 Gene3D Phosphorylase Kinase; domain 1 292 394 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 543 609 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 17 77 - -
Vvi18g196 1122 SUPERFAMILY EGF/Laminin 197 233 - -
Vvi18g196 1122 SUPERFAMILY Protein kinase-like (PK-like) 306 430 IPR011009 -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 929 1086 IPR045274 GO:0007166
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 627 847 IPR045274 GO:0007166
Vvi18g196 1122 ProSiteProfiles Protein kinase domain profile. 323 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 79 430 IPR045274 GO:0007166
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 431 502 IPR045274 GO:0007166
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 77 IPR045274 GO:0007166
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 845 893 IPR045274 GO:0007166
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 898 926 IPR045274 GO:0007166
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 929 1086 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 431 502 - -
Vvi18g196 1122 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 845 893 - -
Vvi18g196 1122 ProSitePatterns Calcium-binding EGF-like domain signature. 703 728 IPR018097 GO:0005509
Vvi18g196 1122 ProSiteProfiles EGF-like domain profile. 155 197 IPR000742 -
Vvi18g196 1122 ProSiteProfiles EGF-like domain profile. 198 235 IPR000742 -
Vvi18g196 1122 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 214 225 IPR000152 -
Vvi18g196 1122 Gene3D Laminin 201 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g196 - - - vvi:100262500 722.235
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g196 . . . . . . . . Cmo04g02519 Cmo15g00654 . . Car01g00906 . . . . Bhi04g01850 . . . . . Lcy10g1281 Cla08g00641 . . . . . . . Cone7ag1498 . . . . . Cme03g00459 Blo17g00163 . . Bda13g01455 Bpe02g01680 . . Bma02g00198 . Cmo01g01069 . . . . . Cpe01g02085 . . . . . . . . . . . . . . . Lsi08g00492 . Chy03g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76368 PF07714 PK_Tyr_Ser-Thr 1.70E-16 CL0016 Vvi PK