Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g197 ATGGATTTGGGTGCTTCTACGCTCCTGTGCCCTCCATTGGAGCTCACAGATAAGAAAGAACATGGGGTTTCTCCATCTGACTCATCTTTTTTTAAAAAACAACCCAACATTCCTATGGAATTCATTTGGGCAAAAGGGGAAGTGGGTCATGCTCATGAAGAGCTCAGAGAGCCGGTGGTGGATCTTGAGGGGTTCTTTTCAGGTGATGAGGTGGCTACACAGCATGCTGCCATGCTTGTTAGGTCAGCTTGCTTGAACCACGGCTTCTTCCAAGTGATCAACCATCGGGTCGATCCACACCTCATTACTGTTGCACATGACCATATGGAGGCATTTTTTAAGCTGCCATGGTCCAAGAAACTGAGGGCTCAGAGGAAACCTGGTAGTCTATGGGGTTATTCGGGTGCCCACGCTGATCGTTTTTCATTGAAATTGCCATGGAAGGAAACCTTATCTTTTGGTTTCCATGAGAATGGCTCTGAATCTGTTGTGGAAGATTTCTTCAAGTCCACCTTAGGGGAAGAATTTGAGCAGACAGGATTAGTCTATCAAAAATATTGTCAAGCGATGAAGGACTTATCCCTCGTCCTGATGGAACTTTTAGCCATCAGCTTGGGAGTAGATCGCTTACATTATAGAAAATTCTTCGAAGATGGTAGTTCTATAATGAGATGCAACTACTATCCACCTTGCCAAGAGCCAGGCCTCGCCTTTGGCACAGGACCACATTGTGATCCAACCTCCCTGACCATTCTCCATCAGGATCAAGTTGGAGGCCTTGAAGTCTATGTGAACAACAAATGGAGGACCATCCGCCCTCGATGCGATGCCCTAGTTATCAATCTTGGTGACACATTTAAGGCACTATCTAATGGAAGATACAAGAGTTGCCTTCACAGGGCTGTGGTGAACAGGTACAAGGAGAGGAGATCACTGGTGTTCTTCGTGTGCCCTAGAGAGAACAAGGTGTACTACAGAGCTGACGATGCTACCCTCCAAAACTTTACCAAATGGCTTCTATCCTCCAATCCTCCTAACCACCACTATATTGTTCTTGATTATTTAGTCAACCACGATAAATTCCTTAGTTCAAGATGTTCATTTTCAAGTATTAAAAATATTTCAGTTGAGTGGGATATGGCGGGATGTAACACTTGGTCAAGTGCTATATACACAAGCTCTAAAATGATGGACCGTTCTCTTTCTTTATCCAGTGAAAAGGATCCAGACTAA 1233 44.44 MDLGASTLLCPPLELTDKKEHGVSPSDSSFFKKQPNIPMEFIWAKGEVGHAHEELREPVVDLEGFFSGDEVATQHAAMLVRSACLNHGFFQVINHRVDPHLITVAHDHMEAFFKLPWSKKLRAQRKPGSLWGYSGAHADRFSLKLPWKETLSFGFHENGSESVVEDFFKSTLGEEFEQTGLVYQKYCQAMKDLSLVLMELLAISLGVDRLHYRKFFEDGSSIMRCNYYPPCQEPGLAFGTGPHCDPTSLTILHQDQVGGLEVYVNNKWRTIRPRCDALVINLGDTFKALSNGRYKSCLHRAVVNRYKERRSLVFFVCPRENKVYYRADDATLQNFTKWLLSSNPPNHHYIVLDYLVNHDKFLSSRCSFSSIKNISVEWDMAGCNTWSSAIYTSSKMMDRSLSLSSEKDPD* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1982672 1985445 - Vvi18g197 Vvi18g197 779900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g197 410 Pfam 2OG-Fe(II) oxygenase superfamily 221 318 IPR044861 -
Vvi18g197 410 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
Vvi18g197 410 Pfam non-haem dioxygenase in morphine synthesis N-terminal 58 158 IPR026992 -
Vvi18g197 410 PRINTS Isopenicillin N synthase signature 80 97 - -
Vvi18g197 410 PRINTS Isopenicillin N synthase signature 243 264 - -
Vvi18g197 410 PRINTS Isopenicillin N synthase signature 278 304 - -
Vvi18g197 410 Gene3D - 30 342 IPR027443 -
Vvi18g197 410 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 29 324 - -
Vvi18g197 410 PANTHER GIBBERELLIN 20-OXIDASE 29 324 - -
Vvi18g197 410 SUPERFAMILY Clavaminate synthase-like 30 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g197 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - vvi:100267658 715.301
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36