Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g201 ATGGAGGCGAAGGTGGAGGAGGAAGGGGATTTTCGTGGCCTCAAAACCCTAGATTCTTCCGACGGCCCATCCACCCAACAACTCGCCGACTCCTTTCAAGCTCAAGGAGACAAGCTTGCTGAGGGTGGAAAGTATCGTGAAGCACTAGGGAAGTGGGAGACTGCTCTTACTTTGATGCCTGGAAAAGCAGTTTTACATGAACAAAAGGCTCAAGTTTTACTTGAGATAGGAGATGCATGGAATGCTTTGAAGGCAGCAACTCGGGCTACTGAATTGGAACCATCATGGGCTGAGGCTTGGATTACCCTTGGTAGAGCACAGTTAAACTTTGGGGAGCCTGATATTGCCATCAAAAGCTTTGACAGGGCATTAGCTATCAAGCCTAATTCTGAGGAGGCTCAAGATGACAGAAAAAGTGCATTTCATCTTGTAAAGAGGCGTAAGCAGCTGCATTCATCAGGTCTGAGTGATACCGAAAATCGTTTTGTGGTTGGTGACAAGACCTAA 507 47.14 MEAKVEEEGDFRGLKTLDSSDGPSTQQLADSFQAQGDKLAEGGKYREALGKWETALTLMPGKAVLHEQKAQVLLEIGDAWNALKAATRATELEPSWAEAWITLGRAQLNFGEPDIAIKSFDRALAIKPNSEEAQDDRKSAFHLVKRRKQLHSSGLSDTENRFVVGDKT* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2130879 2138950 + Vvi18g201 Vvi18g201 779904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g201 168 ProSiteProfiles TPR repeat region circular profile. 97 129 - -
Vvi18g201 168 SUPERFAMILY TPR-like 27 147 IPR011990 GO:0005515
Vvi18g201 168 Gene3D Tetratricopeptide repeat domain 21 160 IPR011990 GO:0005515
Vvi18g201 168 SMART tpr_5 63 96 IPR019734 GO:0005515
Vvi18g201 168 SMART tpr_5 29 62 IPR019734 GO:0005515
Vvi18g201 168 SMART tpr_5 97 130 IPR019734 GO:0005515
Vvi18g201 168 ProSiteProfiles TPR repeat profile. 97 130 IPR019734 GO:0005515
Vvi18g201 168 MobiDBLite consensus disorder prediction 1 15 - -
Vvi18g201 168 Pfam Tetratricopeptide repeat 69 130 - -
Vvi18g201 168 MobiDBLite consensus disorder prediction 1 29 - -
Vvi18g201 168 PANTHER OSMOSIS RESPONSIVE FACTOR 15 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g201 - - - vvi:100241993 335.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g201 . Blo12g01116 . . . . . . . Cmo15g00656 . . . . Sed03g0441 . . Bhi04g01857 Tan11g1227 Cmetu03g1243 . Hepe02g2733 . Lcy10g1268 Cla08g00630 Cam08g1048 Cec08g0634 Cco08g0746 Clacu08g0755 . Cre08g0564 . . Cone17ag0811 . . . . Cme03g00478 . . . . . . . . . . . . . . Car15g00592 . . . . . . . . . . . . . . . . Lsi08g00475 . Chy03g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011996 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27