Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g202 ATGTTTGGTGATGGGAATACGAGCAATGCGGATGGGAATGAACACACGGCACCAGCTGTTCTTTGCAGGAGTGAAGCAGTGCAAAACGGGTTTGCGGTTGGAACTGGCATTGATGTCACTGATGGGAGCTCGAGTGGGGGTTTCCAAACTTATAAGAGGCGGAAGCGCAGGAAGGGGAGTTTAGAAACTGAACCTATAAAAGATGGAAGGTGTTTGGTCAAAGCGGGGACTCAATTAGCTGATGAGTTGGGGAAAGCACTATTGATTTACACAGTGGAGAGATGGCCAAATTATACACTATTTGTTTGCAGAGAAACAAAAAATGAGGCATGCGCAATTTACGTACCTATTACAATGCCAATTCCAAGCATTTATATTGCCTACATGGAAATGGAATCCATATACATATGGTGTGTAAGGCAAGTGTGGATGATTGAAGTTAAGTGGAGATGTTTCATGCGCTTCAAAGGGCATGAGAGAGAAAACTCGGTTAGGCTACAAATGTCCAGAGAGTGTGTCAAGTTTGGGGGAGGTATGGTAACTAGGAAAGTAGCTGGTGGCTCTGAAAAGGTATCATCTCTAAGCCTGGGTGATAGGCTTTCTTTTTGGAAGAAACAAAAGCTTGGTTCCTTGGAGGGAACAAGACATGGGTCTTTTAGCACACATAGTTGGTTTGAACGACATTGTTTGCTAAGTAGAATTGGAGGCTCCTCAGCTAAACATTATGGAGCTTGTTTTGATTTGATTGAGAGGAAGGGGAGGCCACATGGGGGGCTAGTGCCATTATCACCACTTTTTTCTCCAAAGGATCAACTAGTTACTGTAAAACAATCAATGGATGTAGGTTTACTCAATAATTTTTCTAAGCGAGCGGTTATTCCTATGATAGATCATCATGCTATTGTGAATGGATTAGATGACAGCCCACAGCAGCATTGGAGAAATATTGTACTGGACCAGATGTACCGATCATTAAGTGATAGTGAAGGTGGTATTCGGGGCTGTGTCCGAGCTGCACTCCTATCTTGTCCAGAAGTTGATCATACAACCACAATTAAGAAACCTGTGCACTTTCACAAAGATGTACGCTGTCCTCCCCACACAGGCTTGTTGCCAAATGAATCTGCAAGCAGAAGTCATGTGGGTGTAACATCTAATGGATCTCTCAGTGAATCAGATCATCATACTATCACTGAGCTGTGTCGGCGATCTTTCTTTAAGTTGATAATGTCAGAGAAGTTTGCATCACTATGTAAACTAATGTTGGAAAACTTCCAAGGAATCAAGGTTGACAATTTTTTTGATTTTAGTCTTATACACTCAAGGATGATTGAAGGAGCTTATGAGCGTTCACCCATGCTTTTCTCTTCAGATGTTCAGCAGGTATGGAAAAAGCTTCAAAGAATTGGTACTGAAATAGTTTCTCTTGGAACGACCCTTTCGGAAATGTCAAGGACTTCTTATTCTGAATTGGTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCTTGTGGTGTGTTCAAAGTTTGCAGTTGCAGACATTGTGGTGAGAAGGCAGATGGGAGAGATTGCTTAGTATGTGATTCCTGTGAGGAAGTATACCATATTTCCTGTGTTGAGCCTGCTGTCAAAGTGATTCCCCACAAAAGTTGGTATTGTGTTGACTGCATTGCGAGTAGGTTACCCCATGAGAACTGTGTGGTCTGTAAGAAGCTGAATGCTCAGAGAACCCTAATTAATGGGGTTGGTGATGATATCATATCAATGAATGAAGAAACAGATATGGAATTGGAAGAGAGTTCCAATTGCATAACAGAAGTTGGAATTCAACAACAGAAAGAAACCAAATACTTCCAACTTTGTAAAATTTGTGGAAGTGACATGGAATTTGGCGAACATCTGTTGGAATGTGGCCACCCATTCTGCCCTAATAAATACTACCATAAGAGTTGCCTGACAAGTACAGAATTAAGGATGTATGGTCCCTGTTGGTACTGCCCTTCCTGTCTTTGTAGAGCTTGCCTTACTGATCGTGACGATGAGAAGATCATTCTTTGTGATGGCTGTGACCATGCATACCACATTTATTGCATGAATCCTCCGCGCACTTCAATTCCAAGAGGCAAATGGTTTTGCAGAAAATGCGATGCTGATATCCAGAAAATACGCAAGGCAAAAATGGTATTTGAGGACCTTGAAAGGGAAAGGAAACAGAAAGGTGAACAGGTGATCGATAAAGATGAAGAGGGACCGATGGATATTCTACTGAATGCGGCCCAGACTCTTAACTTGCAGGAAGAATTGGCTGCCATCCGCATGGATAGGTAA 2388 42.46 MFGDGNTSNADGNEHTAPAVLCRSEAVQNGFAVGTGIDVTDGSSSGGFQTYKRRKRRKGSLETEPIKDGRCLVKAGTQLADELGKALLIYTVERWPNYTLFVCRETKNEACAIYVPITMPIPSIYIAYMEMESIYIWCVRQVWMIEVKWRCFMRFKGHERENSVRLQMSRECVKFGGGMVTRKVAGGSEKVSSLSLGDRLSFWKKQKLGSLEGTRHGSFSTHSWFERHCLLSRIGGSSAKHYGACFDLIERKGRPHGGLVPLSPLFSPKDQLVTVKQSMDVGLLNNFSKRAVIPMIDHHAIVNGLDDSPQQHWRNIVLDQMYRSLSDSEGGIRGCVRAALLSCPEVDHTTTIKKPVHFHKDVRCPPHTGLLPNESASRSHVGVTSNGSLSESDHHTITELCRRSFFKLIMSEKFASLCKLMLENFQGIKVDNFFDFSLIHSRMIEGAYERSPMLFSSDVQQVWKKLQRIGTEIVSLGTTLSEMSRTSYSELVEGAVLSASEDGKNEVCTRESDSHTKLEQLVACGVFKVCSCRHCGEKADGRDCLVCDSCEEVYHISCVEPAVKVIPHKSWYCVDCIASRLPHENCVVCKKLNAQRTLINGVGDDIISMNEETDMELEESSNCITEVGIQQQKETKYFQLCKICGSDMEFGEHLLECGHPFCPNKYYHKSCLTSTELRMYGPCWYCPSCLCRACLTDRDDEKIILCDGCDHAYHIYCMNPPRTSIPRGKWFCRKCDADIQKIRKAKMVFEDLERERKQKGEQVIDKDEEGPMDILLNAAQTLNLQEELAAIRMDR* 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2150108 2166350 - Vvi18g202 Vvi18g202 779905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g202 795 SMART PHD_3 640 690 IPR001965 -
Vvi18g202 795 SMART PHD_3 531 577 IPR001965 -
Vvi18g202 795 SMART PHD_3 693 736 IPR001965 -
Vvi18g202 795 SUPERFAMILY FYVE/PHD zinc finger 529 581 IPR011011 -
Vvi18g202 795 ProSiteProfiles Zinc finger PHD-type profile. 638 692 IPR019787 -
Vvi18g202 795 Gene3D - 455 579 - -
Vvi18g202 795 PANTHER HISTONE ACETYLTRANSFERASE 315 784 - -
Vvi18g202 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 763 IPR013083 -
Vvi18g202 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 694 IPR013083 -
Vvi18g202 795 Pfam PHD-finger 691 737 IPR019787 -
Vvi18g202 795 Pfam PHD-finger 532 577 IPR019787 -
Vvi18g202 795 ProSiteProfiles Zinc finger PHD-type profile. 529 579 IPR019787 -
Vvi18g202 795 PANTHER D4, ISOFORM A 315 784 - -
Vvi18g202 795 SUPERFAMILY FYVE/PHD zinc finger 637 690 IPR011011 -
Vvi18g202 795 Coils Coil 742 769 - -
Vvi18g202 795 ProSiteProfiles Zinc finger PHD-type profile. 688 738 IPR019787 -
Vvi18g202 795 ProSiteProfiles Zinc finger RING-type profile. 641 689 IPR001841 -
Vvi18g202 795 SUPERFAMILY FYVE/PHD zinc finger 690 742 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g202 - - - vvi:100247132 1092.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14304 PF00628 PHD 4.60E-13 CL0390 Vvi TR