Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g203 ATGAGGTGCATATCGTGTCGGGAGGACTACGGCAGAATTGACGCCGGCACGTGCAAGGAGTGCTACGAGGAAGCCAGCGAGACCGAGGAAGAGCTTAAGCGTGAGATCGAAGAACTCAAAGCCAAAGTCGCCTTTCTCCGATGTTCGTCTCCTCTCGACCACTCTCACCGCCGCTCCTTTTCCGACGTCATTTTGGTTGCTTCCAATGATGACTCCGCCGCATCGGCTGCGCCGGTTCCGGCTCATAAGTCCGTTTTGGCAAGCCGTTCCCCGGTTTTCAAAGCAATGCTTGAGAATGAGATGGAGGAAAGCCTGAGCGGCACCATCAAGATTAGCGATGTATCATATGAAGCCCTTCGCTGTTTTGTTAACTATTTATACACTGCTGAAGCATGTCTTGATGAGCCAATGGCTTGTGATCTTCTAGTATTGGCTGAAAAATATCAAGTGAAGCATCTTAAGGCATATTGCGAGAAGTTCATGGTGTCCAAATTGAACTGGGACAATTCGGTTATCAGCTTTGCTTTTGCACATCAGCACAATGCCAAACTCTTGATTGATGCAGCTTTGTCAGTAATCACCGATAACATGGACAAGCTAACTAAACGGGAGGAGTATATAGAGCTTGTGGAAAAGGATCCTCGCCTCGTTGTGGAAATCTATGAAGCTTATCTCTCAAAACAGGTCAATACTGCTGCACATAAGGATTCTTCTCTGAAGCCATGA 726 47.38 MRCISCREDYGRIDAGTCKECYEEASETEEELKREIEELKAKVAFLRCSSPLDHSHRRSFSDVILVASNDDSAASAAPVPAHKSVLASRSPVFKAMLENEMEESLSGTIKISDVSYEALRCFVNYLYTAEACLDEPMACDLLVLAEKYQVKHLKAYCEKFMVSKLNWDNSVISFAFAHQHNAKLLIDAALSVITDNMDKLTKREEYIELVEKDPRLVVEIYEAYLSKQVNTAAHKDSSLKP* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2174947 2177102 + Vvi18g203 Vvi18g203 779906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g203 241 ProSiteProfiles BTB domain profile. 61 135 IPR000210 GO:0005515
Vvi18g203 241 SUPERFAMILY POZ domain 57 163 IPR011333 -
Vvi18g203 241 Pfam BTB/POZ domain 57 164 IPR000210 GO:0005515
Vvi18g203 241 CDD BACK 168 220 - -
Vvi18g203 241 PANTHER GH01369P 2 237 - -
Vvi18g203 241 Coils Coil 18 49 - -
Vvi18g203 241 Gene3D - 166 240 - -
Vvi18g203 241 PANTHER SPECKLE-TYPE POZ PROTEIN 2 237 - -
Vvi18g203 241 SMART BTB_4 61 165 IPR000210 GO:0005515
Vvi18g203 241 Gene3D Potassium Channel Kv1.1; Chain A 30 165 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g203 K10523 SPOP; speckle-type POZ protein - vvi:100243658 431.795
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g203 Blo01g01311 . Bda01g00680 . Bpe02g00625 . . Bma01g02094 . . Cma01g01033 . Car01g00908 . . . . . . . . . . . . . . . . . . . . Cone17ag0814 Cone20ag0419 . . . . . . . . . . . . . Cmo01g01072 . . . . . . Cpe02g00858 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14305 PF00651 BTB 1.30E-23 CL0033 Vvi TR