Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g208 ATGTGGAGTCCAACACCAAACGATGGTATTAGAGAAGGGAAGAGGAAAAACAGTAGCGCAAGTCCATCAAGAGAGAGAAAGAGAGAGAGAAATCGGCAAATGGATCTCCCGCCGTTAATTCATCACCACCCCAATTCTTCAAGGTATGCTCATATCCCTTCTCAATTGCCCGATGATCCTAATTTCTATGGTAATCACCGCCACCACCACCATCTTCTGCAACTTTCGCCGGCACTCCCTCCGCCACCTCCGCCACCATCGTACCGTCCTCTCACCGTTCCTCCACCGCCGCCGCCCTTCAGCCCCCACCAATCTCAATTCACTTTTCGTAGCGCTAACCCTAGCCCTAACCCTATTCGTCTGATTGATGACGAACCCGGATCTCTCCATCACCACCACCACCGCCATCTTGATGTGCGTCGGTCACCACATAGGGTTTCTAATCGGACCCTTTTGGACGATGATCGTCACCGTCTTCGCGTGCACCACTTTGATAATTCACGTCCCGAGTTTTGGGACCCTTCCAGGGTTTCGACCGAGAACCGGCCGCCGAGGCTGTACCATGTCATCCGATCGGATCACGAGACCAGTCATAACCGATCATTTAATCACAATCCCGTTTCACCGTTCCGTGCAATCGGTGAGTTTAGGCATGATCCGGAGGGTAGTTCTAGGTTTAGGGATGAATTGAATGGTGGATTTGAACATAAACGGGTCGAGGAGTTGGTGTGGGGTCGAGGTGAGGGTCGTAGCCATGATGATTTTGATCGCCACAGCCATTTGGTACAGAATGCTAACAAATCTTTGAGGAATATTGGTTTTGGTGATTCTCATTTTGTTGTGGAACCCGACTCCTCAAGTTTGGGGAATTATGACTCAAGATACGGCTCGTCACGTGATGAGGAGTTCATTAGGAATGGCAGAGGTGATGGAGTGAGTGAAAATCAGAGGTGGGCTCATAGTAGACAACCCCAAAGAGACGCGGCCAACTATTTAATTGGTCTGGAAAACAATGAGATTGATGATGGCGGTGGGGTTCAGGTTTTCTCCTTCAAACGAGGCCCCAATGCCCTGGAGTTGGGAAAATTTACTAATAGGGGGAGCAGGGAGGGTAGTCATGAATTCACTCGCTCCCCCAGAAAGAAAATACAGAAGAAGAGTGCCCTTCTCAGGATTCAACTGCAGAAGCCTAGTCCTAGAAAGAGAGATGATGGGCAGTTTTATTATGATGAGTCCACCTCTAGTCAATATAGAGGTAAAGAGCCCCTTGAATATTTGGATCATGGAATGGCAGACAAGAGAGAAAGGAGTCCAGTAGAGCTTGATGTTTCTTTCAAATCCAATTCACTAGTAGCCAAGGCAATTATGGCCCCTTCAAGCCCCACGGTTGTTTCTGATAGAAATTTGTGTTTGATACCTAGGAACAGAGAGCTTAGGAAAATTACACTGCCTAATATGGATAATTCAAGTTCACAGCTGAATAAACTCAATGAGGAACCTGTAAAACGGGATTGCTTGCCAAGTGTTGTGGCCGACCCATCCTTGTGTCATAAAGATCCAAAACAGTTGAAGGAGAAAGTGACAGCTTCTGGTCTTGAAACTGTGCAAACTTTTAGTTCAAAGCCTTGTTCCAGTGGGACCAATATTTCACTGGAAAACAATAGAGTGGAAGGATCTCTTAACAGTATGGTTTCAGAAAAGGTTGCTGCCAGCATTGGTTCTGGTGGAATGTCTTCACCCAAGGTCACAAAGAAGAAGAAAGTCATAAGGAAAGTATCGATTCCTATTTCTCGTGCATCAAATTCACAATTAACAAAGAAACCAGGAGAAGCTCCAGGTAGTTCCACCCTTAGGCCATCTGCAGCCTCTAGCTCCAATAATGCAGCACATCCAAAAGAGAAAATAACTTCTGCTGGTTTAATTTCAGTCACTGGTGTTAATGAAGTAACTGCATTGTCTAAGAATAACAAAGTGAATGAGTCTCTGCTGTCAAATATTTCAGAGAAAAGTGTCACTGACACTGTTTCTGGTCAGGCATGTGTAGCTGAGCTTACAGAAAAGAGGAACAGATTAAGTCCTCCTTCAGGGTTTTCCAGTCAGAAGGAAACCAACTTTCATGAGGGTCCCATAAATACTGAAGGATCCATACATGATTTGAATGTCATCTCAAATTCTGAAAAGGGTCTAACTAGATCTCCAAATGAAACAACTTATATTGACATTGATGGTATAAGTGACGTTAGCATGCAGATTTGTCAAAATGGTCCGAGTGTGTCACTTGAGAATGATGTTTTAAAAGGGTCTTCAGAGACTATGCTTTCAGTAGGAGGCAATGTTAATGTTTGTTTGTCAAGTTTAGAGGAAACAAAGATTCATGAGGGTCTTGCCAATACAAATAATTCCGTCCATGATTTGAATATTGGATCTAGTTCTGATTGTGATTTAATTAAGACACAAGAGAAAATTTCCACCTCTGATATTGGCACTGTGGGTGCTGTGAGCAGGCATCCTTGTTCTAACCACGTCAGTGTACTGCTTGAGAATCCAAGGCCTTTTTCTTTAGGAGGGAATGCGAGTGTTCCTGTTCTATGTTCTAAGGAAAACAAAACTCATGAGGGTCCCTTAAACGTGGATGGCTCCAGTAACAGGACAGGGACTGCCTTGACTTCTGACCACGGTCTTACTAAATCACAAGTGAAAATTACTGCTTCTAACACTGGTATTGTGGATGATGCTGGCAAGCAGCTGTCTCAAGATGGGGTCATCATGTCAGTTGAGAATGGTGCCATAGAGAGACCTGCAAAAGATATGGCTTCAATGGGAGGCAATCTTAATGTTGATTCTGGTAAGGATTATACACCCAAGGGTAAGAAAAAGAGAAAAATTAGAACCTCTCAGTCAGATTTGTCTCATTCAGCAAAAGTGCATGTGAAACCTCTAAATGTAATCACCTCTAGGCATGATGTGGATGCAACCTTAAGTTGTTCTATGAAGGATCCTAGCCTTGCAAATTCTTATGTTGGGAGTTTGAAGGTTGGCTCAGAAGCTTGTGAAGATAGGGTCAGTGTTTTGCATGGGAACAGTTCAATGAAAGACCTTTCTGAGGCTAAGGTTTCTTTTAGAGATGTTGATGTTGGTCAAAATGGGACTTCTCCTAAGCTCAAAAAGAGGAGGAAAGGCTTTGTTCCTGATCCAGGTTTTTCTAGCCCAATGGGGCCTGAGATCCACAAGGAATCTCTAATTCCAGATGCCTCAACGATTGGTCCTGAAGTGCCTTCAAATTCTAATGATTGTCTTACACAATCAGAAGAGCAAGTTCCAGTCTCTGGCATTACTATGTCTGCTACTGGTTTGCAGCCTTGTCTGGAGGGAAACACTGTATTGCCTGAGAACAGAACAACAAGAGGAAATTTTGAGGCCATGAGTTCAGTAGGAGATGATTCGAGTGCCAATGATATGAAATTTCTGCAACCAAGTGTTATTGTTGAGGAGTTAGCCATTCCAAGTTTGCAATCTTCTTGTCCATCAGGATTGAGGGTTGAGCTGATAGAAACTCCAGGTATGTCTTCTGTTGATCATCAAAATGAGATTATGGGCCTGGAAAGTGGAATTAGAGAAAGAATCAGTGTACATGGTCTGGAAGAGCCGGGTATGCTTCGCAGGGGGACTGCTGACTGCAAAAGTACTGCAGCCCTTGAGACTCTGGACTTGAATCGTAGACAACTCAGTACAGGTATGGAATGTGATACTCATACTCTTATGAAGGATGATAAACAACCTACCGTATCAAACTATCTGTCTATAGCTGCTGATGGCAATGGAGTCTCTCCTACTAACTCCAATGATGAACTGATGCAATCTCTGCCTGATACACTTTCCAACATGGCCTCTCCTGAAACCTTGCCCCTTATTCCTGGTCTACACACGTTGGATACTGAACTATCAGTTGAGCAAATTTCAGATCAAAAGGGTTGTGGAGATGACAGAAAATCAGATGAAAAGCCTATGGTTGATTGTGGTTCTGTTTTATTTGCCCATAATTCATGTTCACAGAGTTCCGAAAGTAATTTTAAATTAGATGATGCAATAGGAAGTGATAATTCAATCAATGGGAAAACAGTACAACCATCATCACAGGATACCAAAAGAACAACACACAGTGTAAATCTTATTAGTGGAGAGTTGAATGGGAGCAAAAACCATCTAAATAATTTGGTTCCTAGGGTTTTTCCAGCTCCTTCATCCTTTTTCCTTGCCAATTCAAAGAAGACAGCTTCTTCAACTCACATTGCAAAACCCCGAACATGGTATCGAACTGGGGCTTCGTCTTCATCATTAAAGAAGCCTCTCTCGATTGCATTTCCTCCACAAAGGCAGTTGAAAAAAATTGGAAAGGTACAAGGTACTTCTTACATTCGTAAAGGCAACAGCCTTGTAAGAAAACCTGCTCCAGTTGCTGTTATTCCCCAGGGTTCACATGGTTTGAGTTCCTCTGTTTACCGATTGAATCCTTCTGGTGTAGATGAAATGAGAAAGAGAACAGGATCTGAAAGCAGAACTGATGTTATTGACCCATCTAATCGCTCAAGCACAGGAGCAACAGATGCTCCTTCTGAGAGGCCTCAAACACCTCCATTACCCTATTCCACCAAATTACCAAAATGCACTACCATCTCTTCAGTGCCAATGTCTTCTGAGGATGGAGCAAAGTCTTCTGGAAGTACAGAAAATCAAACTGGTTTGATCAATAATTTGGAAAGCCAGAGTGTCTTAAATGATGGAAATTCAGAGTCTTCAAAATTGAAGAGGGTAACATATGTGAAGCGCAAGTCAAACCAGTTAGTTGCTGCTTCAAATCCACATGACATGTCTGTTCAAAATGCGGATAAAACCCCAGCATTATCCTCTGATGATGACGGTTCAAACTCTGAGGGGCAAAGGCCCCCCAAGCTTGTTTCAAGCAAAAGTTCTAGCAAGAGGCCATCTGATAAAGTTTTATCAAAGACACGTGAACCTTCAAAATTCTCTTTAGTTTGGACACTAAGAGGTGCACAGTCATCAGAAAAAGATGGTAATTCAGTTCATAGTCAAGGGGTATTGCCTTCTCTATTTCCATGGAAAAGAGCAACATACTGGAGAAGTTTTATGCATAATCCAGCTTCGATTCCCAACAGTACTTCGTTATCAATGATCAGTAGGAAATTGCTACTCTTGAGAAAGAGAGATACAGTTTACACGAGGTCAACTGGAGGATTTTCCCTCCGAAAATCCAAGGTATTAGGTGTCGGTGGGTCTAGTCTGAAATGGTCAAAATCCATTGAAAGACAATCCAAAAAAGCTAATGAGGAAGCTACACTAGCAGTTGCTGCAGTCGAAAGGAAAAAAAGAGAACAGAATGGTGCTGCTTCTGTTATTTCTGAGACAGAAAGTAGAAATCATTCTTCCCGTGAGCGTATATTTCGTGTTGGTTCAGTCCGCTACAAAATGGATTCTTCAAGACGGACACTTCAGAGGATTTCAGATGGGGATTCAACATGCTCTGCAGCTCTACAATCAGAAAAGAATGCAAAGAAACCTTACATTCCAAGGAGATTGCTGATCGGCAATGATGAATATGTTCAGATTGGCAATGGTAATCAGCTTATCAGAAATCCAAAGAAACGTACTCGCATCTTGGCAAGTGAGAAAGTTCGATGGAGTTTGCACACCGCCAGGCTGCGCTTGGCTAAGAAGTGGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGCAACAAGGATGATGGAAAATGTCCATATATTCATGATCCCTCTAAAATTGCAGTCTGCACAAAGTTTCTGAATGGTTTATGTTCCAACCCCAATTGCAAATTGACTCATAAGGTCATTCCAGAAAGAATGCCAGACTGTTCTTATTTTTTGCAGGGTTTATGCAACAACGAAAGCTGTCCTTATAGGCATGTAAATGTGAACCCAAATGCATCTGTTTGCGAAGGCTTTCTTAGGGGCTATTGTGCTGATGGCAATGAGTGTCGGAAGAAACACAGCTATGTCTGCCCCATCTTTGAAGCTACTGGAAGCTGTCCTCTAGGATCCAAATGCAAACTTCACCATCCCAAAAACCGAAGCAAAGGAAAGAAGAAGAAACAATCAAGAGAGCTAAATGCCCAAGGAAGGTACTTTGGTTTTAGGCATGTCAACAATCGTGATCCAGAAAAGGTGGTGTCTGAAAAGGACACTGCAAAGAACAATGATGACATATCATTTCAAGAAGGAAGATTTGCTGATTATATCAGCCTGGATGTTAGTGATGAAGACATTGGAAGTATCAATGGTCCAAGGACCCAGCAAACAACCTTGTTTGGCAGTGAACCATCATATTTGCATTTGGACGATCTGGATGAGCTGATTAAACCAGTCCTTATAATGAATAAGAATTTGACAGCATAA 6450 42.74 MWSPTPNDGIREGKRKNSSASPSRERKRERNRQMDLPPLIHHHPNSSRYAHIPSQLPDDPNFYGNHRHHHHLLQLSPALPPPPPPPSYRPLTVPPPPPPFSPHQSQFTFRSANPSPNPIRLIDDEPGSLHHHHHRHLDVRRSPHRVSNRTLLDDDRHRLRVHHFDNSRPEFWDPSRVSTENRPPRLYHVIRSDHETSHNRSFNHNPVSPFRAIGEFRHDPEGSSRFRDELNGGFEHKRVEELVWGRGEGRSHDDFDRHSHLVQNANKSLRNIGFGDSHFVVEPDSSSLGNYDSRYGSSRDEEFIRNGRGDGVSENQRWAHSRQPQRDAANYLIGLENNEIDDGGGVQVFSFKRGPNALELGKFTNRGSREGSHEFTRSPRKKIQKKSALLRIQLQKPSPRKRDDGQFYYDESTSSQYRGKEPLEYLDHGMADKRERSPVELDVSFKSNSLVAKAIMAPSSPTVVSDRNLCLIPRNRELRKITLPNMDNSSSQLNKLNEEPVKRDCLPSVVADPSLCHKDPKQLKEKVTASGLETVQTFSSKPCSSGTNISLENNRVEGSLNSMVSEKVAASIGSGGMSSPKVTKKKKVIRKVSIPISRASNSQLTKKPGEAPGSSTLRPSAASSSNNAAHPKEKITSAGLISVTGVNEVTALSKNNKVNESLLSNISEKSVTDTVSGQACVAELTEKRNRLSPPSGFSSQKETNFHEGPINTEGSIHDLNVISNSEKGLTRSPNETTYIDIDGISDVSMQICQNGPSVSLENDVLKGSSETMLSVGGNVNVCLSSLEETKIHEGLANTNNSVHDLNIGSSSDCDLIKTQEKISTSDIGTVGAVSRHPCSNHVSVLLENPRPFSLGGNASVPVLCSKENKTHEGPLNVDGSSNRTGTALTSDHGLTKSQVKITASNTGIVDDAGKQLSQDGVIMSVENGAIERPAKDMASMGGNLNVDSGKDYTPKGKKKRKIRTSQSDLSHSAKVHVKPLNVITSRHDVDATLSCSMKDPSLANSYVGSLKVGSEACEDRVSVLHGNSSMKDLSEAKVSFRDVDVGQNGTSPKLKKRRKGFVPDPGFSSPMGPEIHKESLIPDASTIGPEVPSNSNDCLTQSEEQVPVSGITMSATGLQPCLEGNTVLPENRTTRGNFEAMSSVGDDSSANDMKFLQPSVIVEELAIPSLQSSCPSGLRVELIETPGMSSVDHQNEIMGLESGIRERISVHGLEEPGMLRRGTADCKSTAALETLDLNRRQLSTGMECDTHTLMKDDKQPTVSNYLSIAADGNGVSPTNSNDELMQSLPDTLSNMASPETLPLIPGLHTLDTELSVEQISDQKGCGDDRKSDEKPMVDCGSVLFAHNSCSQSSESNFKLDDAIGSDNSINGKTVQPSSQDTKRTTHSVNLISGELNGSKNHLNNLVPRVFPAPSSFFLANSKKTASSTHIAKPRTWYRTGASSSSLKKPLSIAFPPQRQLKKIGKVQGTSYIRKGNSLVRKPAPVAVIPQGSHGLSSSVYRLNPSGVDEMRKRTGSESRTDVIDPSNRSSTGATDAPSERPQTPPLPYSTKLPKCTTISSVPMSSEDGAKSSGSTENQTGLINNLESQSVLNDGNSESSKLKRVTYVKRKSNQLVAASNPHDMSVQNADKTPALSSDDDGSNSEGQRPPKLVSSKSSSKRPSDKVLSKTREPSKFSLVWTLRGAQSSEKDGNSVHSQGVLPSLFPWKRATYWRSFMHNPASIPNSTSLSMISRKLLLLRKRDTVYTRSTGGFSLRKSKVLGVGGSSLKWSKSIERQSKKANEEATLAVAAVERKKREQNGAASVISETESRNHSSRERIFRVGSVRYKMDSSRRTLQRISDGDSTCSAALQSEKNAKKPYIPRRLLIGNDEYVQIGNGNQLIRNPKKRTRILASEKVRWSLHTARLRLAKKWKYCQFFTRFGKCNKDDGKCPYIHDPSKIAVCTKFLNGLCSNPNCKLTHKVIPERMPDCSYFLQGLCNNESCPYRHVNVNPNASVCEGFLRGYCADGNECRKKHSYVCPIFEATGSCPLGSKCKLHHPKNRSKGKKKKQSRELNAQGRYFGFRHVNNRDPEKVVSEKDTAKNNDDISFQEGRFADYISLDVSDEDIGSINGPRTQQTTLFGSEPSYLHLDDLDELIKPVLIMNKNLTA* 2150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2231116 2244484 - Vvi18g208 Vvi18g208 779911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g208 2149 MobiDBLite consensus disorder prediction 874 891 - -
Vvi18g208 2149 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 867 2146 - -
Vvi18g208 2149 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 432 792 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 1488 1669 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 691 712 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 1 107 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 360 382 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 395 422 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 597 633 - -
Vvi18g208 2149 Gene3D - 1936 1991 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 1549 1601 - -
Vvi18g208 2149 SMART c3hfinal6 1911 1937 IPR000571 GO:0046872
Vvi18g208 2149 SMART c3hfinal6 2018 2040 IPR000571 GO:0046872
Vvi18g208 2149 SMART c3hfinal6 1964 1989 IPR000571 GO:0046872
Vvi18g208 2149 SMART c3hfinal6 1991 2017 IPR000571 GO:0046872
Vvi18g208 2149 SMART c3hfinal6 1938 1962 IPR000571 GO:0046872
Vvi18g208 2149 MobiDBLite consensus disorder prediction 1520 1538 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 597 632 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 938 972 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 871 891 - -
Vvi18g208 2149 Gene3D - 1992 2054 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 688 712 - -
Vvi18g208 2149 ProSiteProfiles Zinc finger C3H1-type profile. 1964 1990 IPR000571 GO:0046872
Vvi18g208 2149 MobiDBLite consensus disorder prediction 123 144 - -
Vvi18g208 2149 ProSiteProfiles Zinc finger C3H1-type profile. 1909 1938 IPR000571 GO:0046872
Vvi18g208 2149 ProSiteProfiles Zinc finger C3H1-type profile. 2013 2041 IPR000571 GO:0046872
Vvi18g208 2149 MobiDBLite consensus disorder prediction 1047 1073 - -
Vvi18g208 2149 PANTHER CCCH ZINGC FINGER 432 792 - -
Vvi18g208 2149 PANTHER CCCH ZINGC FINGER 867 2146 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 76 103 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 1611 1660 - -
Vvi18g208 2149 MobiDBLite consensus disorder prediction 9 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g208 - - - vvi:100262507 4138.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g208 . . . . . . . . . . Cma01g01036 . Car01g00911 . . . . . . . . . . . . . . . . . . Cone4ag1435 Cone7ag1500 . . . . . . Blo17g00165 . . . . Bpe14g00400 . Bma02g00201 . Cmo01g01075 . . . . . . Cpe02g00855 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003643 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 2 3 12 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14306 None None None None Vvi TF