Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g209 ATGAAGATGATACCAGGTGGGTCTTCCGGAGAAGTGGAGAAGTCCGGCGGTGGGACGGTGGTGGTCGGAGTGAAGTTGGACTCGCAGAGTAGAGAGTTGCTGACTTGGGCTCTGGTGAAAGTGGCTCAGCCGGGTGACCGTGTGATTGCTCTGCATGTTCTTGGTCACAATGAAATGGGTGTATGTAGAAATTGTGGATCGAGATGGGAAATCGTCGCTTCTTTCGCTGTATATGAAGGTTTCTGCAACTTGAAACAGGTGGATCTCAAGCTAAAGATCTGCAGAGGTTCATCTATCGGGAAAATTCTGGTCAGGGAGGTGAAATCTTATGTTGCTAGTAAGGTTATAGTAGGAACAGCTCGGAACCATCATGCAATCAGGTCATCCGCCGCGGTTGCAAAGTACTGTGCAAAGAAACTACCAAAGGATTGTTCAGTTCTTGCTGTGAACAATGGGAAAGTTGTGTTCCAGAGAGAAGCTTCTATGAGAACTACTGTTGATTCACAAGAAAAAGAGGAACATCGCCGGAATGGTTTGCTCGGTGGAATTCAGCAGTCAGTGAGTAAGAAATCAAAGGCATTAAATCATGGCAAGGTAAATGAGGAGCCATCAACCATCTGTGATCCAAGTGCTTGCCAGAGTTTGGAGTTGGGGCTGAATTCATGTAGTCAATCCATAGAAGGATCTTCTGGTGACAGCCATCATGAAGATGATTCACTGGCTATTGTGCCTGTTCAGAAGCTAGAGGCATCATCGAGTTCAATCTCTCTGTTGATCAGAGAATTGCCTGAACTGAGACCTGGTTGGCCGCTCCTCCGCCGGGCCATTTTACCAGACCGGCAAACTTCTACCAAATCCTCAGTGCGGCAGATCTCTGTGGTTCAGTGGGCAATGAGGTTGCCCAGTAGGAACTTTCCATCTGCAGCCAGTTTGGATAATATAGAAAGTAGTTGTGATGGGGATGAAGACCTATCTACCAATTTAGATGGTGAAAGTGGTGCAATTGTTCCAGTAGGAACTGTGAATGCATCTGCTCCACCTTCTCCCAGCCGCAGTTCAACAAAGCTGGCTAAAGAATTGGAGGGTCTTCATGAGAAGTACTCAGCAACTTGTAGACTGTTCAAGTTTCAAGAACTCTTCTCGGCAACATCAAATTTCATGCCTGAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATATATTGAAAGAGTTCCTCTTGGAAATTGAGATTATTTCTACCTTGCATCACAAGAACATCATTTCCCTTTTGGGCTTCTGTTTTGAGAACAATAATCTTCTCCTGGTTTATGATTTCTTATCAAGAGGAAGCCTGGAGGAGAACCTTTATGGTAATAAAAAGGATCTTTTTGCATTTGGTTGGAGTGAGAGATACAAGGTTGCTGTGGGTGTAGCTGAGGCACTGGATTATCTGCACTGTGGCAGCGCTCAAGCCGTGATCCACGGGGATGTAAAATCATCAAATATACTATTAGCAGATGATTTTGAGCCACAGCTCTCTGATTTTGGACTAGCTAAATGGGCCTCAACTTCCTCATCACATATAACCTGCTCTGATGTTGCTGGCACCTTCGGTTACATGGCTCCTGAATACTTCATGTATGGCAAAGTAAATGAGAAGATAGATGTCTACGCATTTGGTGTTGTCCTCCTTGAGCTTCTTTCGGGAAGAAAACCGATCAGCAGTGATTATCCAAAAGGTCAAGAGAGCCTGGTTATGTGGGCAAAGCCAATTCTATATGGTGGGAAGGTTTCTGAATTATTGGACCCAAGCTTGGGCAGTAACTATGACTCCAGCCAGATGGAGAGGATGGTATGGGCTGCTATTCTCTGTATCAGACGTGCGCCAAGAGCTCGGCCACAAATGAGCCTTGTCTTAAAGCTCCTCCAAGGTGACGCGGAGGCAACCAAATGGGCAAGGTTGCAAGTCAACGCTTGTGAAGGGTCTGACACGCCAGATGATGAAGCTTTTCCCCATTCAAATCTCCAGTCCCATCTTAACCTTGCTTTACTTGATGTTGAGGAAGATTCACTCTCCATGAGTAGCATTGAGCAAAGTGTCTCGTTAGAGGACTACTTGCAAGGCAGGTGGAGCCGCTCATCAAGCTTCGACTAA 2199 45.61 MKMIPGGSSGEVEKSGGGTVVVGVKLDSQSRELLTWALVKVAQPGDRVIALHVLGHNEMGVCRNCGSRWEIVASFAVYEGFCNLKQVDLKLKICRGSSIGKILVREVKSYVASKVIVGTARNHHAIRSSAAVAKYCAKKLPKDCSVLAVNNGKVVFQREASMRTTVDSQEKEEHRRNGLLGGIQQSVSKKSKALNHGKVNEEPSTICDPSACQSLELGLNSCSQSIEGSSGDSHHEDDSLAIVPVQKLEASSSSISLLIRELPELRPGWPLLRRAILPDRQTSTKSSVRQISVVQWAMRLPSRNFPSAASLDNIESSCDGDEDLSTNLDGESGAIVPVGTVNASAPPSPSRSSTKLAKELEGLHEKYSATCRLFKFQELFSATSNFMPENLIGKGGSSRVYRGCLSDGKELAVKILKQSDDILKEFLLEIEIISTLHHKNIISLLGFCFENNNLLLVYDFLSRGSLEENLYGNKKDLFAFGWSERYKVAVGVAEALDYLHCGSAQAVIHGDVKSSNILLADDFEPQLSDFGLAKWASTSSSHITCSDVAGTFGYMAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWAKPILYGGKVSELLDPSLGSNYDSSQMERMVWAAILCIRRAPRARPQMSLVLKLLQGDAEATKWARLQVNACEGSDTPDDEAFPHSNLQSHLNLALLDVEEDSLSMSSIEQSVSLEDYLQGRWSRSSSFD* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2245946 2250187 - Vvi18g209 Vvi18g209 779912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g209 732 SMART serkin_6 386 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g209 732 SUPERFAMILY Protein kinase-like (PK-like) 368 657 IPR011009 -
Vvi18g209 732 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Vvi18g209 732 CDD STKc_IRAK 392 659 - -
Vvi18g209 732 Gene3D HUPs 18 152 IPR014729 -
Vvi18g209 732 ProSiteProfiles Protein kinase domain profile. 386 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g209 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Vvi18g209 732 Gene3D Transferase(Phosphotransferase) domain 1 461 675 - -
Vvi18g209 732 Pfam Protein kinase domain 389 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g209 732 PANTHER - 212 714 - -
Vvi18g209 732 PANTHER - 11 201 - -
Vvi18g209 732 Pfam Universal stress protein family 19 145 IPR006016 -
Vvi18g209 732 Gene3D Phosphorylase Kinase; domain 1 350 460 - -
Vvi18g209 732 PANTHER OS08G0249100 PROTEIN 11 201 - -
Vvi18g209 732 PANTHER OS08G0249100 PROTEIN 212 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g209 - - - vvi:100267665 1308.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g160 Vvi18g209 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76369 PF00069 Pkinase 3.80E-42 CL0016 Vvi PK