Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g211 ATGGAATCTGAGGTATTGGGTGCTGAGGATCCATTGAGTAATTGCACTGGGCCGAGCGAGCAGAAGGGCGGTGAGGGAAGGGTTAGAGATGCTGTGGAGGGGAGAAGTGATCATGTCGTGGATGGGATAAAGGTTGATATATGGAGCCAAATTTTGCCTTCACAGGAGGGTGAAATGCAATTGGAATTTTTGGGCATGGACGGTTTCCTCAGTGATTGTTCTGAGCTGAATGACCAGATGGGTGCAAAGTTGGCTGGGGATGTTAAAGATAAAGGTGGTGTTTTAGGCGGGATATCCGTTGGTGGGTTTGAGCAAGCATCGCCTTCACAGGGTTGTGAAACGCCCTTGGAATTATTACTTACAGGTGGTTCGCTGAGTGATTGTGCTGAACATAATGAGTGCAAGGCTGACATGAGTGTGAATGGTTCTTGTGGGGAGGTCAGGGAGGTCGTGGAAGAGAAAATTGACGGTTTAGGTGGGATAAATGAGCAACTATTGCCTTCACAGGGTTGTGAAATGCCAATGGAATTACTAGTTTCAGGTGGTTCACTGGGTAATTGTGGTGAAGATAGTGAAAACAAGGTTTATCTTTCTGTTAATGGTTCATGTGTGGAAGAGGTCAAAGAGGTTGTGGAAGAGAAAAATGAAATGTTAGGTGGGATAAATGAGCAAATGTTGCCTTCACAGGATTGTGAGATGCCCTTGGAGTTACTAGTTACAGGGGGGTTGCTATGTAGTTGCGATGCAGATAATGAGTGCAAGGCTGATACGAGCATTGAAGGTTCTTATGGGGAGGAGGCTAGGGAGGTTGTCAAAGAGAAAAGTGAGATTTTTGATGGAACAGATGAGCAAACACTGCCTTCACAAGGTTGTGAAATGCTTACAGGTGGTTCTTTGAGTAGTTGTGGCAAAGATAATGAGTGCAAGGTTAATACGAGCATTAATGGTTCTTGTTGGGAGGTTGTGGAAGGGAAAAATGATGCTTTAGGTGGAATAAATGAGCCAATATTGCCTTCACAGAGGGTTGAAACTCCCTTGGAATCTTTAGTTGCAGGTGGTTCACTGAGTACTTGTGTAAAAAATAATGACTACAAGGTTGAGATGAGTATCAATGGTTCTTCTGGAAAGGATGTTCAGGAGGCTGTGGAAGAGAGAAGTGATATTTTAGATGGGATAGATGAGCAGATCTTGCCTTCACAAGGTTGTGAAATGCCCTTGGAGTCATTAATTAAGGGTTCACTAAGTAATTGTGCCAAAGATGACGAGTGCAAGGTTAATTTGAGTATTAATGCCTCTTGTTGCAAACAGATTAGGGAGGTTGTAGAAGAGAAAAGTGACATCTTACGTATGATAAATGAGCAAATATTGCCATCTCAGGGCTGTGGAAGGCCATTGGAATCACCAAGTAATTTTGCAGAACAGAATAAGCATAAGGATTCTGGGGTTGCTGGTGGTCCCTCTGAGTTTGTGGATGATATTTTAGCTGGATCACAGAACAACAAGATCAGACAAATTTTGCCCTCACAGGATTGTAAAATTCCCTTGGAGCATTTATCTGTGGCTAGTTCACCTACTGATTGTGCTGAAGGGAATGTGCAGAAGGTTACTGCAGGATTCGATGGTTCCTCTGCAGAGACAGTGACTGAGGTTGTGGAAGAGAAAAGTGATATTTTTCTGGGAATGAAGGGTGAAATGTGCAGCCAAATATCACCTATTGAAGAAAATATGTATGATTTAAGAGAAAGATCATCCAGCATGGCACCTGATTATACTCTTGAAAAATCAGACTCCCCGCCACCTTGTTGCTACTCTGGTGTTGTGGATAATGGTTCCTCTGAGATTTTTGCTGAGCCAGGTTATTCAGGAGCTGATGTTCTTATTGATGCTTTTAATTCTACTGATGCTGATTCTTCTGGAAATATAGGTGGTGAAGAAAAAGTTGATGTTAGATGGGATTGTGTTTCAGAAACCAAATGTCCAGAAATTATATGTTTGCCTCCTCGGAGGAGTGCCCGTGCAAGAAAATCGAGCCAGAAGACGCAGACAGCAAATGTTGCAAGGAAAGGCTGGAAAACTGCCAACAAGAAGCCACACTCTCATGGAATATTTGAAATTTTCTTGAAGGTTGTCAGAAAGAAGCGAAGCAGTTTCTGCAAACCGGCTCGTGCTTCTATTTGGGGATCATTGGAGAATATTACTCAAGTTTTTTATCATAATAGTGACCTTGATTGTGGTCGGGTTCAGAATCAAGGATCACGAAAAACAAAGGGTGGCCGAGGATGTGGAAAGCGGAATAAGAGTAGGGCAGTTGGAAACTCACAAGGGTCAAAGGTAAAAGGTCGTGCATCAACTAGTCATATTCGTTTGAAGGTTAAAATGGGCAAAAGGGTAAGTCAAAGTGGTTCAAAGGATATTGTTCCGGACGTGGTTGATACTTCAGATCCTGTTCAGACCATGTTTAGTGATAATGGGTCTGAACTATGCTGGGCCATGGGTTCAGAATTACAGAAATTCACAGTTGGCATTGAAACACAATTAGTGGAAGAAATCCCTGGGACTGGGCAGCATCTCACTTCTCATGGGAATCTGGAGAAAGAAAAAACATCTCCAATTGATTCTGCTTTAGACGAAGTCCACTTCACAGATAAGGACCAGGAGACCATTGTGATTCCAGATAACTCTGATAGAAATGCTGCCACTAATTATCTTAGTATTTCTTCCAAGACAGAGGTTGAAGCATTGGAAGGTGCAATTGACAATGGGTACTTAGATCCAGGAACTTCACCTGATTCAGAAGTGATCAACCTGATTCCTGATGGCCAAGTTGGTGCAAGGGTTCAGGAAGACTTGCATGATGTTGTTCAGGCTTCTTCCAAAGATTCTGTTGCTGCTGCAGATGTAACAAGTTCGAATGTGCCTCTTCTAGATGGATCATCCGAATCACAGAACTCTAAGAAATTACTTCCTTCTACTAAAGCTAAGGGGCATAAACTTCCCAAAAGTTCAAAATCTGGTCGAGCAAGCAAGAGCAGGTCACAGTTCCTTGATTCAGGGAGGAACCAAAGACGAAATGCTTGTAGGCAGAAGGAAAGCCAACAAAAGTCAGCTAGAAAGAACGTAAACGAGGAGGGTGTTTGCAACCATGTCTGCAAAGTTGAAAGTCACCAGGAAATAGCTTATGCAGTAGAAAATCACGTAGTTGATGATATTGGAGAAATTGTTACTGCTGAAAAAACTGTCTCCAAAGACATGTCTAACTTGGACATGATCCAAAATGAGGTAGTGAGGCAGTATTTACCACCACGGATTGCTTGGGTGCGTTGTGATGATTGCTATAAATGGAGACGTATAGCGGCTGCACTTGCAGATTCCATTGAAGAAACAAATTGCAAATGGATCTGCAAGGACAACATGGATAAAGCATTTGCTGACTGCTCAATCCCTCAAGAGAAGTCAAATGGAGAGATTAATGCTGAGTTGGAAATATCAGATGCCTCATGTGAAGAAGATGTTTATGATGCCCATTTAACTTCTAAGGAATTTGGACAAAGGCGTTCAACAGTTACCCAATCATCATCTTGGATGCTGATTAGGTCTAATTTATTTCTGCACCGTAGCCGCAGAACTCAAACTATTGATGAGGTAATGGTTTGCCACTGCAAAAGACCTGTAGAAGGCCGTTTCGGTTGTGGAGATGAATGCCTGAATCGAATGCTTAACATTGAATGTGTTCAAGGGACCTGCCCATGTGGGGATCTCTGTTCAAATCAACAGTTCCAGAAACGTGGTTATGCCAAATTGAAGTGGTTCAAGTGTGGGAAGAAGGGTTATGGGCTGCAGTTGCAACAAGATATTTCTCAAGGGCAGTTTCTTATTGAATATGTTGGAGAGGTACTTGATTTGCAAACATACGAAGCACGACAAAAGGAGTATGCTTCTAGGGGTCATAAGCATTTCTACTTCATGACATTGAATGGCAGTGAGGTAATAGATGCATGCGCAAAAGGAAATTTGGGGCGTTTCATCAACCATAGTTGTGATCCTAACTGCCGCACAGAAAAGTGGATGGTGAATGGAGAAATTTGTATTGGACTATTTGCATTAAGGGATATAAAAAAGGGTGAAGAGGTGACATTTGATTACAACTATGTGAGGGTGTTTGGTGCTGCCGCCAAAAAGTGTGTCTGTGGTTCACCACAATGTCGGGGCTATATAGGTGGAGATCCACTTAGCACCGAAGTAATTGTTCAAGGTGACTCAGATGAAGAATATCCTGAACCTGTGATGGTCAATGAAGATGGTGAAACTGCTGATAGCTTTGACAATACAATATCTACAACCAGTTCCTTTGATGCTGCAGAAATTCAAACATCATCTGATTCTGCTGATGCTAATGTATCCAAATCTGAAACCCCTGAAGAGAAGCAAGTTTGTTCAAAATCGCGTCTTCTCATGAAAGCTTCTCGTTCATCTAGTTCAGTTAAAAGGGGAAAATCTAATAGTAATCCTGTGAATGCCAACAAGCCTCCTGGTATTGGCAACAAAACTCAGGTTTTGTCCAACAAGCCCAAAAAATTATTGGATGGTTCTGCTAATGCCCGTTTTGAAGCAGTTCAGGAGAAACTCAATGAGTTGCTAGATGCTAATGGAGGAATAAGCAAAAGGAAAGATTCATCTAAAGGATACTTGAAGCTTTTGCTCCTCACTGTAGCATCAGGTGACAACGGCAATCGTGAAGCAATTCAGAGCACGCGAGATCTTTCAATGATCCTTGATGCACTCTTGAAAACAAAATCTCGAGTTGTCTTGGTTGATATTCTTAACAAAAATGGTTTGCGGATGCTGCACAATATAATGAAGCAGTATAGCAGGGAATTCATTAAGATTCCTGTTCTTCGCAAGCTTCTGAAGGTCTTAGAGTATTTGGCACTGAGGGGGATACTTACCTTGGAACATATTAATGGAGGTCCTCCTTGTCCTGGAATGGAGAGTTTTAGAGATTCAATGTTGACACTGACTGAGCACAATGACAAACAGGTCCATCAAATTGCACGAAGCTTCCGGGATCGGTGGATTCCTAGACCTGTCAGAAAAATTAGCTGCATGGATAGGGATGATGGCAGGATGGAATTCCACAGGGGTTCAAACTGCAGCCGGTTTTCATCACAACACAATTATTGGCGTGAGCAGGAGGAAAGCTCTGCACCTGGTTTTGGTGGTAGTGCAACGAATGGGACAAACACAAGGAAACGTAAAAGCCGATGGGATCAGCCAATAGAGGCACACCCAGATCCAAGATTCCATCCGCACAAGGAGCAAAAAGAGGAGGAGGATGAACGGCAGAACTTGCATGAGGATGTTCCTCCTGGGTTTGCGTACCCTCTCAACACTCCTCTCACTTTTGAAGTGGCTGGGGGGCATCCACAGAAGAGATTCAATTCTTGCTTGCCTGTTTCCTATGGAATTCCATTGTCCATTGTTCAACAGTTTGGGACTCCCCAGGGAGAAACTATGCAAAGTTGGGTTGTTGCTCCAGGCATGCCTTTCCATCCTTTTCCACCATTGCCCCCATATCCCCGGGACAGGAGAGATCCTCCATCCCGGACTGTTAATCCCATAACCAGAAATCAACCAGGAGAAGAGCAACAAAACTGCCATGGTTCTGCATCTTGTCATACAGATCAAAGCACTCCAAGCACATCTGGTGCCAGTCCACCTGATGTGAATGTTCCTTGTGCAAACAACCAACATGTGTTTAAACGAGTGAAGAACAATTCATATGATTTGGGAAGGAAGTACTTCCGTCAGCAGAAATGGAATAATTCAAAAGGAATTTATGATATATTTTCTTCCTGTAACTTATTGTCATGGAAATAA 5877 42.79 MESEVLGAEDPLSNCTGPSEQKGGEGRVRDAVEGRSDHVVDGIKVDIWSQILPSQEGEMQLEFLGMDGFLSDCSELNDQMGAKLAGDVKDKGGVLGGISVGGFEQASPSQGCETPLELLLTGGSLSDCAEHNECKADMSVNGSCGEVREVVEEKIDGLGGINEQLLPSQGCEMPMELLVSGGSLGNCGEDSENKVYLSVNGSCVEEVKEVVEEKNEMLGGINEQMLPSQDCEMPLELLVTGGLLCSCDADNECKADTSIEGSYGEEAREVVKEKSEIFDGTDEQTLPSQGCEMLTGGSLSSCGKDNECKVNTSINGSCWEVVEGKNDALGGINEPILPSQRVETPLESLVAGGSLSTCVKNNDYKVEMSINGSSGKDVQEAVEERSDILDGIDEQILPSQGCEMPLESLIKGSLSNCAKDDECKVNLSINASCCKQIREVVEEKSDILRMINEQILPSQGCGRPLESPSNFAEQNKHKDSGVAGGPSEFVDDILAGSQNNKIRQILPSQDCKIPLEHLSVASSPTDCAEGNVQKVTAGFDGSSAETVTEVVEEKSDIFLGMKGEMCSQISPIEENMYDLRERSSSMAPDYTLEKSDSPPPCCYSGVVDNGSSEIFAEPGYSGADVLIDAFNSTDADSSGNIGGEEKVDVRWDCVSETKCPEIICLPPRRSARARKSSQKTQTANVARKGWKTANKKPHSHGIFEIFLKVVRKKRSSFCKPARASIWGSLENITQVFYHNSDLDCGRVQNQGSRKTKGGRGCGKRNKSRAVGNSQGSKVKGRASTSHIRLKVKMGKRVSQSGSKDIVPDVVDTSDPVQTMFSDNGSELCWAMGSELQKFTVGIETQLVEEIPGTGQHLTSHGNLEKEKTSPIDSALDEVHFTDKDQETIVIPDNSDRNAATNYLSISSKTEVEALEGAIDNGYLDPGTSPDSEVINLIPDGQVGARVQEDLHDVVQASSKDSVAAADVTSSNVPLLDGSSESQNSKKLLPSTKAKGHKLPKSSKSGRASKSRSQFLDSGRNQRRNACRQKESQQKSARKNVNEEGVCNHVCKVESHQEIAYAVENHVVDDIGEIVTAEKTVSKDMSNLDMIQNEVVRQYLPPRIAWVRCDDCYKWRRIAAALADSIEETNCKWICKDNMDKAFADCSIPQEKSNGEINAELEISDASCEEDVYDAHLTSKEFGQRRSTVTQSSSWMLIRSNLFLHRSRRTQTIDEVMVCHCKRPVEGRFGCGDECLNRMLNIECVQGTCPCGDLCSNQQFQKRGYAKLKWFKCGKKGYGLQLQQDISQGQFLIEYVGEVLDLQTYEARQKEYASRGHKHFYFMTLNGSEVIDACAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCVCGSPQCRGYIGGDPLSTEVIVQGDSDEEYPEPVMVNEDGETADSFDNTISTTSSFDAAEIQTSSDSADANVSKSETPEEKQVCSKSRLLMKASRSSSSVKRGKSNSNPVNANKPPGIGNKTQVLSNKPKKLLDGSANARFEAVQEKLNELLDANGGISKRKDSSKGYLKLLLLTVASGDNGNREAIQSTRDLSMILDALLKTKSRVVLVDILNKNGLRMLHNIMKQYSREFIKIPVLRKLLKVLEYLALRGILTLEHINGGPPCPGMESFRDSMLTLTEHNDKQVHQIARSFRDRWIPRPVRKISCMDRDDGRMEFHRGSNCSRFSSQHNYWREQEESSAPGFGGSATNGTNTRKRKSRWDQPIEAHPDPRFHPHKEQKEEEDERQNLHEDVPPGFAYPLNTPLTFEVAGGHPQKRFNSCLPVSYGIPLSIVQQFGTPQGETMQSWVVAPGMPFHPFPPLPPYPRDRRDPPSRTVNPITRNQPGEEQQNCHGSASCHTDQSTPSTSGASPPDVNVPCANNQHVFKRVKNNSYDLGRKYFRQQKWNNSKGIYDIFSSCNLLSWK* 1959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2259997 2287308 - Vvi18g211 Vvi18g211 779914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1005 1021 - -
Vvi18g211 1958 SUPERFAMILY SET domain 1194 1403 IPR046341 -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1449 1466 - -
Vvi18g211 1958 ProSiteProfiles Post-SET domain profile. 1390 1406 IPR003616 -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1852 1911 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 961 989 - -
Vvi18g211 1958 ProSiteProfiles Zinc finger CW-type profile. 1099 1153 IPR011124 GO:0008270
Vvi18g211 1958 MobiDBLite consensus disorder prediction 990 1004 - -
Vvi18g211 1958 PANTHER - 1 978 - -
Vvi18g211 1958 PANTHER - 974 1278 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1449 1519 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 748 785 - -
Vvi18g211 1958 Gene3D SET domain 1160 1419 IPR046341 -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g211 1958 ProSiteProfiles AWS domain profile. 1213 1263 IPR006560 GO:0005634|GO:0018024
Vvi18g211 1958 MobiDBLite consensus disorder prediction 670 694 - -
Vvi18g211 1958 SMART set_7 1265 1388 IPR001214 GO:0005515
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1483 1519 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 459 487 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1022 1037 - -
Vvi18g211 1958 CDD SET_SETD2 1264 1406 IPR044437 GO:0010452|GO:0046975
Vvi18g211 1958 ProSiteProfiles SET domain profile. 1265 1382 IPR001214 GO:0005515
Vvi18g211 1958 Pfam SET domain 1276 1382 IPR001214 GO:0005515
Vvi18g211 1958 Pfam CW-type Zinc Finger 1105 1151 IPR011124 GO:0008270
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1728 1748 - -
Vvi18g211 1958 SMART PostSET_3 1390 1406 IPR003616 -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1749 1784 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1728 1784 - -
Vvi18g211 1958 SMART shorttest3 1213 1264 IPR006560 GO:0005634|GO:0018024
Vvi18g211 1958 MobiDBLite consensus disorder prediction 767 781 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 1869 1911 - -
Vvi18g211 1958 Gene3D - 1104 1159 - -
Vvi18g211 1958 PANTHER SET DOMAIN PROTEINS 974 1278 - -
Vvi18g211 1958 PANTHER SET DOMAIN PROTEINS 1 978 - -
Vvi18g211 1958 MobiDBLite consensus disorder prediction 958 1039 - -
Vvi18g211 1958 Pfam AWS domain 1228 1262 IPR006560 GO:0005634|GO:0018024
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g211 - - - vvi:100245350 1910.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14308 PF00856 SET 4.70E-18 No_clan Vvi TR