Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g212 ATGAAGAAGGCCAAGGAGATCACTGTTCTCTGCGATGCTCATGTCTCTCTTGTTATCTTTGCTAGCTCTGGAAAGATGCACGAGTACTGTAGCCCTTCTACAACGTTGATTGATATCTTGGATAGGTATCACAAGCAGTCTGGGAAGAGGCTATGGGATGCAAAACATGAAAATCTCAACAATGAATTGGATAGGATCAAAAAGGAGAATGATAGCATGCAGATTGAACTCAGGCACCTGAAGGGGGAGGATATCTCATCTCTGCACCACAAAGAACTCATGGCCATTGAGGATGCCCTTGAGATTGGCCTTGCAAGTGTTCGCAACAAACAGATGGAATTCTACAAGATGGTCAAGAAAAATCAACGAATCCTGGAGGAGGAGAACAAGCACCTCAATTACATCGTGCACCACCAGGGTATGCCCATGGAGGCGGGCAATGTGAGAGAGGTGGAAAGTGGATATCATCAGAGAGCTGTGAGGGACTACAATCCCCAGATGCCTTTCGCCTTCCGGGTGCAGCCAATTCAGCCAAACTTACAGGAGAGGATATAA 555 46.49 MKKAKEITVLCDAHVSLVIFASSGKMHEYCSPSTTLIDILDRYHKQSGKRLWDAKHENLNNELDRIKKENDSMQIELRHLKGEDISSLHHKELMAIEDALEIGLASVRNKQMEFYKMVKKNQRILEEENKHLNYIVHHQGMPMEAGNVREVESGYHQRAVRDYNPQMPFAFRVQPIQPNLQERI* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2291788 2294142 - Vvi18g212 Vvi18g212 779915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g212 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 - -
Vvi18g212 184 Coils Coil 49 83 - -
Vvi18g212 184 Pfam K-box region 54 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g212 184 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 183 - -
Vvi18g212 184 Gene3D - 1 76 IPR036879 GO:0003677|GO:0046983
Vvi18g212 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 29 IPR002100 GO:0003677|GO:0046983
Vvi18g212 184 SUPERFAMILY SRF-like 1 68 IPR036879 GO:0003677|GO:0046983
Vvi18g212 184 SMART madsneu2 1 32 IPR002100 GO:0003677|GO:0046983
Vvi18g212 184 ProSiteProfiles MADS-box domain profile. 1 33 IPR002100 GO:0003677|GO:0046983
Vvi18g212 184 ProSiteProfiles K-box domain profile. 56 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14309 PF01486 K-box 1.40E-17 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g212 K09264 - vvi:100232978 373.244