Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g214 ATGGAAGAAGACAAGGGGGGCGGTGGCGGCGGCGGCGGTGGTGGTGGTGGAGGCGGTGGAGGAGGAGGAGGGGGTGAATCGGCGGGTGTTTCGTCGGGGTTCGTGAAAGCCGGTGAGCGACAGAGGTTTACGGTGGAGCTTCGACCGGGGGAGACCACCATCGTGTCGTGGAAGAGGCTGATCAGGGACGCTCAGAAGGCGAGTGGATCGACATCGGCGGCGCCGGAGGCCCCGGCCAATGCTCACCCGGCTCTCGAGTCTCGCATCGCTCCGGGACAACCTGCTGAAGGCGAATTAAACGATGCTCCTGCTCCGAATCGTTTCAGTGCTGTTATTGAGAAGATTGAACGTCTTTACATGGGTAAGCAAAGTAGTGATGAGGAAGATCTAGATGATTTTCCTGATGATGATCAGTATGACACCGAAGACTCTTTTATCGATGATGCTGAGCTGGATGAGTATTTTCAAGTCGATAACTCTGCAATAAAACATGATGGATTCTTTGTCAACAGGGGGAAGCTGGAACGCATTGAACCTCCTTTATCTCCTAACCATCAATCCAAGAAAAGGCGAAGGAAAGATTTGGCAAAAGCTCAAGGAGAGAGTGATGATGCTAACGTACCAAATAAACATGTCAAAGTGGGTAAGACAGTGTCTGGAAAGTCTGCTGCATTGAATCAATCAAATGCGTCTACAGTAGTGCTCCCGTCCAAGAACCTTGGCAACAAAATGAAAGATGCAAGTGGGTTCTCTGATGCTTCACATCAGAGATATCATGATAAAAATGCTTATACACAATTAAAATCCCAATCTGGAAGACTATCAGACAATCTTAGTCCACTAGAAGTAGCAGCTCGGCCAAGAGAAAAGAATGGTGTTCGAGAACTTCCTGAAACTAATGTCTCAGAGAGCAAGTCTTCACATATTCACCGAAAGGATGGTTCTAGTGCTAGGCCCAAAGGAACAATGCTTGAAAAAGCCATTACGGAATTAGAGAGGATGGTGGCAGAATCAAGGCCGCCCACTATGGATGTTCAAGATGGTGATACTTCATCCCAAGCAGTCAAAAGGAGATTGCCTCCCGAAATAAAGCTGAAACTTGCAAAAGTTGCTAGACTAGCGCAGGCGAGCCATGGCAAAATATCTAAGGAGTTACTTAATCGGCTTATGAGCATTCTCGGACACCTAATCCAGCTTAGGACATTAAAGCGAAATTTGAAAGTCATGATTAACATGGGTTTGTCAGCAAAACAAGAGAAAGATGATAGATTTCAACAGATAAAGAAGGAAGTTATTGAGATGATTAAAATGCGGGTGCCCTCTCCAAGGTCCAAGGGGTTTGATCAACAAGTTGGATCATCGGATGATTTTCAAGAAATCGGTTCTGAAGAAAAGGGCGTTCTTAAAAGAAAGTTTTCTATGGGTGACGAGATGGAGGATAAGATTTGTGATCTCTATGACCTTTATGTTGATGGGCTGGAGGATGATGCAGGTCCACAAATTCGAAAGTTGTATGCAGAGCTTGCAGAACTGTGGCCAAATGGATCAATGGACAACCATGGGATTAAACGTGCAATTTGTAGGGCTAAGGACCGTAAGAGAGCACTATACAGCCGTCATAAGGACCAGGAGAAAATTAAGAGGAAGAAGCTGTTGACATCAAGGACAGAGGATGCTGTTCGAGTTGAGTCTAGTTCAATTGCTCAGCCACAGTATGCTCGGGAGAGGCCGGCCACTGATTCTGGTACTCATGGCTTAACTGCATCTAGTAAGCCAGTACCCAACACAACTACTGCAGCTGTCCGGATGCCTAGTCCTTCAGTGAATGGTCCTAGCTTGGACAAGGTGAAACAAGAGAAGGTAAAGATAAGTTCTGGCAACTCCTTGGACGATCCTAGGGGTGTGGATGGTGCATTGCCAAAGAAAAAGGCGAAGAAGCCAGAACTGGAATCAGGTGAAGCTCATTTCCGTCCCGAGAAGTTGCCTTCCCAACAGGGAGAGGAACGACAGAAATCATACAAGCAGGCTACAGCTCCTCCTTCCCATAAATCAAACCTTCATCAGTCGGGGGCTGTTACAAACTTTGAACAGTCAAGCTGA 2100 46.76 MEEDKGGGGGGGGGGGGGGGGGGGGESAGVSSGFVKAGERQRFTVELRPGETTIVSWKRLIRDAQKASGSTSAAPEAPANAHPALESRIAPGQPAEGELNDAPAPNRFSAVIEKIERLYMGKQSSDEEDLDDFPDDDQYDTEDSFIDDAELDEYFQVDNSAIKHDGFFVNRGKLERIEPPLSPNHQSKKRRRKDLAKAQGESDDANVPNKHVKVGKTVSGKSAALNQSNASTVVLPSKNLGNKMKDASGFSDASHQRYHDKNAYTQLKSQSGRLSDNLSPLEVAARPREKNGVRELPETNVSESKSSHIHRKDGSSARPKGTMLEKAITELERMVAESRPPTMDVQDGDTSSQAVKRRLPPEIKLKLAKVARLAQASHGKISKELLNRLMSILGHLIQLRTLKRNLKVMINMGLSAKQEKDDRFQQIKKEVIEMIKMRVPSPRSKGFDQQVGSSDDFQEIGSEEKGVLKRKFSMGDEMEDKICDLYDLYVDGLEDDAGPQIRKLYAELAELWPNGSMDNHGIKRAICRAKDRKRALYSRHKDQEKIKRKKLLTSRTEDAVRVESSSIAQPQYARERPATDSGTHGLTASSKPVPNTTTAAVRMPSPSVNGPSLDKVKQEKVKISSGNSLDDPRGVDGALPKKKAKKPELESGEAHFRPEKLPSQQGEERQKSYKQATAPPSHKSNLHQSGAVTNFEQSS* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2306431 2323070 + Vvi18g214 Vvi18g214 779917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g214 699 MobiDBLite consensus disorder prediction 220 238 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 582 605 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 538 699 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 1 47 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 128 142 - -
Vvi18g214 699 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 236 699 - -
Vvi18g214 699 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 31 229 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 538 557 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 194 210 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 304 319 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 668 699 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 263 277 - -
Vvi18g214 699 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 236 699 - -
Vvi18g214 699 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 31 229 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 120 142 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 635 667 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 64 106 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 558 572 - -
Vvi18g214 699 MobiDBLite consensus disorder prediction 173 319 - -
Vvi18g214 699 Pfam HPC2 and ubinuclein domain 127 175 IPR014840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g214 - - - vvi:100255662 1233.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g214 . . . . . . . . Cmo04g02506 Cmo15g00661 . . . . . . . Bhi04g01866 . . . Hepe02g2212 . Lcy10g1255 Cla08g00624 Cam08g1038 Cec08g0628 Cco08g0738 Clacu08g0748 . Cre08g0556 . . Cone17ag0820 Cone20ag0424 . . . . Blo17g00168 Blo18g00174 . Bda13g01467 Bpe02g01656 Bpe14g00398 Bma01g00799 Bma02g00203 . . . . . Car04g02312 Car15g00598 Cpe01g02075 . . . . . . . . . . . . . . . Lsi08g00463 . Chy03g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003468 4 3 2 2 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 4 1 1 48