Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g215 ATGATGATGGCGAAATCGTTGAAGGGCGCGAATGTGTTCATGTCGCGGAACCTGGTCCCGCCGGAACTCTTTGATTCGCTTCACGACGCTCTCAAGCTTAACGGCGCCGATGTTTTCCTCTGCTGTGATCCTTCGAGGAACGGCCCTAACGATTACCACATTATCTCATCTTCCGATCACGAGAAATTTGAGGATCTTAGGGCTAAGGGTTGTAATTTGCTCGGGCCACAATGCGTGCTTTCATGTGCAAAGGAACACAGGCCTCTTCCGAAACAAGGGTTCACTTGTTGCCTTGCGATGGATGGGGTTAAAGTCCTCGCGTCTGGTTTTGACATGGATGAGAAGGTTAAGATTGGGAAGTTGGTGACTGCAATGGGAGGTGTTTTGCATACTAAAGCATCTTCCGATGTCAACTTGATATCATGTCTGATTCTCTTACTATATGTCTTCTTGCAGTGGGCTTCTAACATTCTCAAGAAACCAATTGTTACTATCAATTGGTTACATCAATGCTGGACTGAGCACCGTGTGGTTCCTCAGGAGTCATACAGGGTTCTTCCCTTTTCTGGATTGACAATTTGTGTTACTAAAATTCCAGCAGATGAACGCAAGGAGATGGAAATTCTTATCAAACAAAATGGGGGAAAATATTCTGCTGACCTTACCAGGAATTGCACACATTTAATAACTGATATATCCTCTCCTGAAGGTGACAAATACAAGGTTGCCCGAAGATGGGGCCATATCCATATTGTTACTCGGAAATGGTTTGATCAATCTATTGCTAGAAAAGCATGTGTTAATGAGGAGTCCTATACTGTTCAGGGTGGTACTGCATCTTCAATCAACTCTGTAAGGACACATTTGACAGCATCACAAAGCCAAGACAAGAGTAATGTAAATTTCCAATCTGCCTCATCTTCATTGGCTGCAGATTCAAACTTGCAAGCTCCTGCCATGCAGGATAAGGATGAAAATAAGTTAGATGGGCTTGTTGCTGATGATTCTCAAACTGAGGACAGTGACTTGTACTTATCAGATTGCAGGATTTTACTTGTTGGTTTTGAAGCCTCTGAAATGCGTAAGCTAGTAAATATGGTGCGCAGAGGTGGGGGCTCCCGGTATATGTCATTCAATGAAAAATTGACTCACATAGTTGTTGGAACTCCTTCAGAAGTTGAAAAAAAGGTTGTAAGGGGCCTTGCAGCTACAGGTGTCATTTCTGTGGTAAGGACAATCTGGCTTGAAGATTGTGATCATGAAAAGAAAGAAGTTTCTGTACTTCGGAGGCATATTGCTCATGATTTGCTCCTTCCAAAAGATTCTGCTTGCTTGAACAAAGGAGCAGTGGTAGGCATTATAAACCAGGGGAAAAGCTCTACAGTTGCATCCAGCATGCCAGCTGACCAGTCACTGGGAAGCATGAACACTGGATCTAGAATGTTATTGGAGAAAAGCAAGCAAAGAATTCCGGAAGTTAATGTGAATTGGGACAACTTTCTAGAAGAAACAGCGAGGTCTGCTCAGCAAAGCATGCCTTCCATAAATGATAAATATAAGAAGACTCAACAGAAGATGGAGCAATATTCCAACACTCTAAATGTTAAGGATGGGAAGGAATCAAGAGTGTTTAAGGGGAAGCAGTTTCGCTTTTCACATTCTTTTCCTGAAGATAGAAGAGCTGAAATTGTTCAGTGGGTAAATCAAGGGGGAGGAGATGTAGTGGATGATTGGTGCAAACAGAATGTGCACTTCGTTGTTGAATGTCATGGTGCTTTGCTACCCAAGTCTGTCAATGCCTCTCAAACTACTCATGTGTCCAGTCACTGGATTCGATCTTGTTTAGAGGATGGATGCTTGCTGGACGTCAGCAGTCACATTCTTTATTCTCCCCTTCCCTGCCAGATCCCTTTACCTGGATTTGAAAAGCTTCGCTTCTGTGTTTCACAGTATGAAGAGAAAGATAGATTGCTGTTAAGAAACTTGTGCTTTGTTCTTGGAGCTAAATTTGTGGAGAAACTGACTAAAAAGGTCACCCATTTGCTATGTAAGTTCACTGGGGGCCCAAAATATGAGGCTGCTTGTAAATGGGGAATAAAAGCAGTTACATCTGAATGGATTTATGAGTGCATCAAGCAGAACGGAGTTGTTTATGTGGACTCATTTTGTCCAAAAGAAATTACTGCTCATGACCGGCAAGCAGGATTATGCATTATGAGCCAGTATCCTACACAAGCTGCTCAAATGATATCTGCTGACAAGGGTTCCCAGTTACCAACTCAATCTCATGACCTTGGGGACATACCGACTCAATCTATTTGTAATAGAAGTGACAGATTTAATGAAGAGGCAAGACATTCCAGTGTTCACGCAAAAAGAGCAAGGCTTTTGGAAGATGAGAGTCAAAAGACTGTGCCTCCTTCTGGAGCACAAGACATGGATTTTATCAGCAAGATGAACTCTTCTGGAACCACCATCACTGCAGTTACCGAAGAAACTTCTCATGTTGTTCCTGATGTTGCTGCTGCTATTGAGGATTTGTTAGAGCAAACTAGTAAGATTCATGATCTCAAATCACCAGGGAGGACTGGGTGTGAAAAACATCTTTTCTCATCTGATTGTTCACCCCTTGGTCAAGATCATGCAGATTCTCATTCATCTTTCGACTTATCTAAGCACTGGTTAAACAGGATTGAGAAAAAAGATGATATTTGCAATCCTCCTGGAGATGTCAAGGCAAGCACTTACGATGGCTTTAGTGAAACACAAACAGAGTCTCAGGTCGTTGGCTATGAAGAAGACTTATCTGGTCGGCAAATGATAATAGACAGAGTTCGAACCAGAAGTAGCATGTGTTGA 2859 42.53 MMMAKSLKGANVFMSRNLVPPELFDSLHDALKLNGADVFLCCDPSRNGPNDYHIISSSDHEKFEDLRAKGCNLLGPQCVLSCAKEHRPLPKQGFTCCLAMDGVKVLASGFDMDEKVKIGKLVTAMGGVLHTKASSDVNLISCLILLLYVFLQWASNILKKPIVTINWLHQCWTEHRVVPQESYRVLPFSGLTICVTKIPADERKEMEILIKQNGGKYSADLTRNCTHLITDISSPEGDKYKVARRWGHIHIVTRKWFDQSIARKACVNEESYTVQGGTASSINSVRTHLTASQSQDKSNVNFQSASSSLAADSNLQAPAMQDKDENKLDGLVADDSQTEDSDLYLSDCRILLVGFEASEMRKLVNMVRRGGGSRYMSFNEKLTHIVVGTPSEVEKKVVRGLAATGVISVVRTIWLEDCDHEKKEVSVLRRHIAHDLLLPKDSACLNKGAVVGIINQGKSSTVASSMPADQSLGSMNTGSRMLLEKSKQRIPEVNVNWDNFLEETARSAQQSMPSINDKYKKTQQKMEQYSNTLNVKDGKESRVFKGKQFRFSHSFPEDRRAEIVQWVNQGGGDVVDDWCKQNVHFVVECHGALLPKSVNASQTTHVSSHWIRSCLEDGCLLDVSSHILYSPLPCQIPLPGFEKLRFCVSQYEEKDRLLLRNLCFVLGAKFVEKLTKKVTHLLCKFTGGPKYEAACKWGIKAVTSEWIYECIKQNGVVYVDSFCPKEITAHDRQAGLCIMSQYPTQAAQMISADKGSQLPTQSHDLGDIPTQSICNRSDRFNEEARHSSVHAKRARLLEDESQKTVPPSGAQDMDFISKMNSSGTTITAVTEETSHVVPDVAAAIEDLLEQTSKIHDLKSPGRTGCEKHLFSSDCSPLGQDHADSHSSFDLSKHWLNRIEKKDDICNPPGDVKASTYDGFSETQTESQVVGYEEDLSGRQMIIDRVRTRSSMC* 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2324024 2335526 + Vvi18g215 Vvi18g215 779918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g215 952 SUPERFAMILY BRCT domain 187 274 IPR036420 -
Vvi18g215 952 ProSiteProfiles BRCT domain profile. 340 432 IPR001357 -
Vvi18g215 952 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 939 - -
Vvi18g215 952 ProSiteProfiles BRCT domain profile. 641 724 IPR001357 -
Vvi18g215 952 Gene3D BRCT domain 98 186 IPR036420 -
Vvi18g215 952 CDD BRCT_TopBP1_rpt2_like 187 264 - -
Vvi18g215 952 Gene3D BRCT domain 636 726 IPR036420 -
Vvi18g215 952 Gene3D BRCT domain 322 429 IPR036420 -
Vvi18g215 952 Pfam BRCT domain, a BRCA1 C-terminus domain 541 625 IPR001357 -
Vvi18g215 952 Pfam twin BRCT domain 191 256 IPR001357 -
Vvi18g215 952 Pfam twin BRCT domain 644 706 IPR001357 -
Vvi18g215 952 SMART BRCT_7 97 175 IPR001357 -
Vvi18g215 952 SMART BRCT_7 541 618 IPR001357 -
Vvi18g215 952 SMART BRCT_7 342 422 IPR001357 -
Vvi18g215 952 SMART BRCT_7 185 264 IPR001357 -
Vvi18g215 952 SMART BRCT_7 638 714 IPR001357 -
Vvi18g215 952 SUPERFAMILY BRCT domain 58 185 IPR036420 -
Vvi18g215 952 Pfam BRCA1 C Terminus (BRCT) domain 343 418 IPR001357 -
Vvi18g215 952 Gene3D BRCT domain 536 634 IPR036420 -
Vvi18g215 952 CDD BRCT_TopBP1_rpt2_like 639 714 - -
Vvi18g215 952 Gene3D BRCT domain 36 94 IPR036420 -
Vvi18g215 952 Gene3D BRCT domain 187 275 IPR036420 -
Vvi18g215 952 CDD BRCT 103 171 - -
Vvi18g215 952 SUPERFAMILY BRCT domain 541 630 IPR036420 -
Vvi18g215 952 SUPERFAMILY BRCT domain 637 724 IPR036420 -
Vvi18g215 952 SUPERFAMILY BRCT domain 336 425 IPR036420 -
Vvi18g215 952 ProSiteProfiles BRCT domain profile. 100 185 IPR001357 -
Vvi18g215 952 ProSiteProfiles BRCT domain profile. 539 628 IPR001357 -
Vvi18g215 952 ProSiteProfiles BRCT domain profile. 183 274 IPR001357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g215 K10728 - vvi:100260958 1867.05